Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_embryo, section s37.

Sample reads: 113,668. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4911.52 43211.21
2. MT-ATP6 MT-ATP6 1221.85 10749.75
3. MT-ND5 MT-ND5 1204.62 10598.16
4. CIRBP ENSGALG00000030918 1183.94 10416.22 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
5. EEF1A EEF1A 1177.04 10355.52
6. RPLP0 ENSGALG00000023294 1156.36 10173.58 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
7. HBG1 HBG1 1049.51 9233.52
8. gga-mir-3533 ENSGALG00000027736 940.94 8278.33 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
9. RPL35A ENSGALG00000007611, ENSGALG00000041230 921.99 8111.60 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
10. HBZ ENSGALG00000023740 911.65 8020.63 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
11. RPL15 ENSGALG00000011290 884.07 7777.99 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
12. RPS10 ENSGALG00000002813 851.33 7489.94 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
13. RPS23 ENSGALG00000015617 823.76 7247.38 ribosomal protein S23
14. RPL23A ENSGALG00000003966 813.42 7156.41 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
15. GAPDH ENSGALG00000014442 811.69 7141.19 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
16. RPLP1 ENSGALG00000030878 692.78 6095.03 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
17. HBE 654.87 5761.50 hemoglobin subunit epsilon
18. PPIA ENSGALG00000028600 604.89 5321.78 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
19. RPL4 ENSGALG00000007711 598.00 5261.16 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
20. RPSA 596.28 5246.03 ribosomal protein SA
21. RPL13 ENSGALG00000006179 592.83 5215.68 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
22. RPL35 ENSGALG00000035677 591.11 5200.54 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
23. RPS11 ENSGALG00000017299 589.38 5185.32 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
24. SNRPD1 ENSGALG00000041334 582.49 5124.71 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
25. RPL27A ENSGALG00000005948 503.22 4427.29 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
26. RPS29 ENSGALG00000012229 499.77 4396.94 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
27. RPS21 ENSGALG00000005338 489.43 4305.97 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
28. RPS8 ENSGALG00000010124 477.37 4199.87 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
29. MT-ND4 MT-ND4 473.92 4169.52
30. RPS2 ENSGALG00000005490 470.47 4139.16 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
31. RPS15 ENSGALG00000015195 454.96 4002.71 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
32. RPL19 ENSGALG00000001658 453.24 3987.57 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
33. RPL7A ENSGALG00000003197 453.24 3987.57 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
34. MT-CYB MT-CYB 451.52 3972.44
35. RPS12 ENSGALG00000013990 449.79 3957.22 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
36. RPL32 ENSGALG00000027142 439.45 3866.25 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
37. RPL26 RPL26 427.39 3760.15
38. RPS6 ENSGALG00000015082 423.94 3729.79 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
39. RPL12 ENSGALG00000008806 417.05 3669.18 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
40. TXN ENSGALG00000015704 417.05 3669.18 thioredoxin [Source:NCBI gene;Acc:396437]
41. MDK ENSGALG00000008367 403.26 3547.85 midkine [Source:NCBI gene;Acc:423196]
42. gga-mir-3527 gga-mir-3527 403.26 3547.85
43. RPL29 ENSGALG00000026978 398.09 3502.37 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
44. RPL38 ENSGALG00000001465 398.09 3502.37 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
45. RPS15A ENSGALG00000006771 389.48 3426.62 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
46. RPS3A ENSGALG00000010077 389.48 3426.62 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
47. RPS4 RPS4 386.03 3396.27
48. RPL8 ENSGALG00000016232 382.58 3365.91 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
49. RPL27 ENSGALG00000002837 375.69 3305.29 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
50. RPS27A ENSGALG00000036790 373.97 3290.16 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
51. RPL37A ENSGALG00000011472 372.24 3274.94 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
52. NME2 ENSGALG00000002932 368.80 3244.68 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
53. RPL21 ENSGALG00000027035 368.80 3244.68 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
54. RPL14 ENSGALG00000043379 353.28 3108.13 ribosomal protein L14
55. RPS28 ENSGALG00000024398 348.11 3062.65 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
56. GNB2L1 ENSGALG00000000122 337.77 2971.68 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
57. RPL6 ENSGALG00000004818 336.05 2956.54 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
58. ENSGALG00000028649 ENSGALG00000028649 332.60 2926.19
59. RPL36 ENSGALG00000000474 330.88 2911.06 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
60. ALDOC ENSGALG00000026077 329.16 2895.93 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
61. RPL37 ENSGALG00000014833 315.37 2774.60 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
62. RPS16 ENSGALG00000026490 313.65 2759.47 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
63. MT-CO1 MT-CO1 305.03 2683.63
64. LDHB ENSGALG00000035836 303.31 2668.50 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
65. EIF5A2 ENSGALG00000009309 296.41 2607.79 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
66. TCEB3 ENSGALG00000034625 289.52 2547.18 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
67. RPS14 ENSGALG00000004588 280.90 2471.34 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
68. RPS20 ENSGALG00000014432 280.90 2471.34 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
69. RPL24 ENSGALG00000015339 265.39 2334.88 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
70. ENO1 ENSGALG00000002377 263.67 2319.75 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
71. RPLP2 ENSGALG00000034811 261.95 2304.62 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
72. MT-ND1 MT-ND1 258.50 2274.27
73. PRDX1 ENSGALG00000010243 258.50 2274.27 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
74. RPL18A 258.50 2274.27 ribosomal protein L18a
75. EEF1D 255.05 2243.91 eukaryotic translation elongation factor 1 delta, transcript variant X13
76. HMGN2 HMGN2 255.05 2243.91
77. STMN1 ENSGALG00000001475 253.33 2228.78 stathmin 1 [Source:NCBI gene;Acc:396057]
78. ANP32B ENSGALG00000037483 248.16 2183.29 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
79. TMSB4X ENSGALG00000026383 248.16 2183.29 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
80. RPS7 ENSGALG00000016392 246.44 2168.16 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
81. ATP5G3 241.27 2122.68 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
82. RPL36AL ENSGALG00000004952 239.54 2107.46 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
83. RPL7 ENSGALG00000035252 239.54 2107.46 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
84. HNRNPDL ENSGALG00000023199 236.10 2077.19 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
85. RPS13 ENSGALG00000006096 236.10 2077.19 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
86. H3-IX H3-IX 230.93 2031.71
87. MT-ND3 MT-ND3 230.93 2031.71
88. PHB2 ENSGALG00000014567 229.20 2016.49 prohibitin 2 [Source:NCBI gene;Acc:771124]
89. RPL5 ENSGALG00000005922 222.31 1955.87 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
90. RPL23 ENSGALG00000001634 218.86 1925.52 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
91. RPS17 ENSGALG00000002157 217.14 1910.38 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
92. HMGN5 ENSGALG00000007131 210.25 1849.76 high mobility group nucleosome binding domain 5, transcript variant X1
93. EIF4G2 ENSGALG00000005587 206.80 1819.41 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
94. RPS25 ENSGALG00000007699 203.35 1789.06 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
95. RPL31 ENSGALG00000016775 194.74 1713.31 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
96. SLC25A6_1 ENSGALG00000016691 194.74 1713.31 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
97. ENSGALG00000002696 ENSGALG00000002696 193.01 1698.09
98. NDUFB9 ENSGALG00000042242 189.57 1667.82 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
99. ENSGALG00000028992 ENSGALG00000028992 186.12 1637.47
100. RAN ENSGALG00000002569 179.23 1576.85 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA