Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_embryo, section s35.

Sample reads: 113,752. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3603.32 31678.37
2. EEF1A EEF1A 1333.67 11724.88
3. HBG1 HBG1 1280.53 11257.70
4. HBZ ENSGALG00000023740 1242.82 10926.18 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
5. CIRBP ENSGALG00000030918 1203.39 10579.53 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
6. RPLP0 ENSGALG00000023294 1145.11 10067.16 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
7. gga-mir-3533 ENSGALG00000027736 1019.97 8967.00 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
8. RPS10 ENSGALG00000002813 963.40 8469.67 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
9. RPL23A ENSGALG00000003966 905.11 7957.22 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
10. RPL35A ENSGALG00000007611, ENSGALG00000041230 881.12 7746.31 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
11. RPS23 ENSGALG00000015617 851.97 7490.04 ribosomal protein S23
12. GAPDH ENSGALG00000014442 848.55 7459.97 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
13. MT-ND5 MT-ND5 839.97 7384.54
14. HBE 812.55 7143.48 hemoglobin subunit epsilon
15. RPL15 ENSGALG00000011290 802.26 7053.02 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
16. RPL4 ENSGALG00000007711 740.55 6510.50 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
17. MT-ATP6 MT-ATP6 704.55 6194.01
18. RPL13 ENSGALG00000006179 692.55 6088.51 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
19. RPLP1 ENSGALG00000030878 658.27 5787.14 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
20. SNRPD1 ENSGALG00000041334 634.27 5576.15 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
21. RPS15 ENSGALG00000015195 625.69 5500.72 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
22. RPL29 ENSGALG00000026978 618.84 5440.49 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
23. RPL35 ENSGALG00000035677 615.41 5410.34 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
24. RPS11 ENSGALG00000017299 567.41 4988.35 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
25. RPS21 ENSGALG00000005338 545.13 4792.48 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
26. PPIA ENSGALG00000028600 543.41 4777.36 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
27. RPS12 ENSGALG00000013990 519.41 4566.36 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
28. RPS2 ENSGALG00000005490 488.56 4295.15 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
29. gga-mir-3527 gga-mir-3527 488.56 4295.15
30. RPSA 476.56 4189.65 ribosomal protein SA
31. RPL27A ENSGALG00000005948 471.41 4144.37 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
32. GNB2L1 ENSGALG00000000122 464.56 4084.15 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
33. RPL7A ENSGALG00000003197 445.70 3918.34 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
34. RPL27 ENSGALG00000002837 443.99 3903.31 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
35. RPL19 ENSGALG00000001658 442.27 3888.19 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
36. RPS15A ENSGALG00000006771 442.27 3888.19 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
37. RPL38 ENSGALG00000001465 440.56 3873.16 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
38. RPS3A ENSGALG00000010077 440.56 3873.16 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
39. RPS29 ENSGALG00000012229 425.13 3737.50 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
40. RPS4 RPS4 425.13 3737.50
41. RPS27A ENSGALG00000036790 419.99 3692.32 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
42. RPS8 ENSGALG00000010124 413.13 3632.01 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
43. RPL32 ENSGALG00000027142 409.70 3601.85 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
44. RPL12 ENSGALG00000008806 373.70 3285.36 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
45. RPL8 ENSGALG00000016232 371.99 3270.33 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
46. TXN ENSGALG00000015704 370.27 3255.21 thioredoxin [Source:NCBI gene;Acc:396437]
47. MT-CYB MT-CYB 365.13 3210.02
48. TMSB4X ENSGALG00000026383 358.27 3149.71 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
49. RPL36 ENSGALG00000000474 356.56 3134.68 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
50. RPL37A ENSGALG00000011472 356.56 3134.68 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
51. RPL6 ENSGALG00000004818 354.85 3119.64 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
52. MT-ND4 MT-ND4 353.13 3104.52
53. RPL24 ENSGALG00000015339 344.56 3029.18 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
54. RPS6 ENSGALG00000015082 344.56 3029.18 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
55. NME2 ENSGALG00000002932 342.85 3014.14 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
56. RPL26 RPL26 342.85 3014.14
57. TCEB3 ENSGALG00000034625 342.85 3014.14 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
58. LDHB ENSGALG00000035836 339.42 2983.99 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
59. MDK ENSGALG00000008367 332.56 2923.68 midkine [Source:NCBI gene;Acc:423196]
60. EIF5A2 ENSGALG00000009309 329.13 2893.53 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
61. RPS16 ENSGALG00000026490 327.42 2878.49 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
62. RPL18A 318.85 2803.15 ribosomal protein L18a
63. ALDOC ENSGALG00000026077 315.42 2773.00 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
64. RPL21 ENSGALG00000027035 310.28 2727.81 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
65. RPL37 ENSGALG00000014833 310.28 2727.81 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
66. RPS14 ENSGALG00000004588 310.28 2727.81 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
67. RPS28 ENSGALG00000024398 305.13 2682.53 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
68. ENO1 ENSGALG00000002377 287.99 2531.85 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
69. PRDX1 ENSGALG00000010243 286.28 2516.81 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
70. RPL14 ENSGALG00000043379 284.56 2501.69 ribosomal protein L14
71. MT-CO1 MT-CO1 279.42 2456.50
72. MT-ND3 MT-ND3 279.42 2456.50
73. RPL36AL ENSGALG00000004952 279.42 2456.50 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
74. RPL23 ENSGALG00000001634 277.71 2441.47 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
75. ATP5G3 267.42 2351.01 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
76. HMGN2 HMGN2 263.99 2320.85
77. RPS13 ENSGALG00000006096 258.85 2275.66 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
78. EEF1D 253.71 2230.48 eukaryotic translation elongation factor 1 delta, transcript variant X13
79. MT-ND1 MT-ND1 253.71 2230.48
80. ENSGALG00000028649 ENSGALG00000028649 250.28 2200.32
81. RPL5 ENSGALG00000005922 246.85 2170.17 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
82. CRHOA CRHOA 238.28 2094.82
83. ANP32B ENSGALG00000037483 234.85 2064.67 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
84. HMGN5 ENSGALG00000007131 234.85 2064.67 high mobility group nucleosome binding domain 5, transcript variant X1
85. RPL31 ENSGALG00000016775 231.42 2034.51 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
86. GPC4 ENSGALG00000006080 224.56 1974.21 glypican 4 [Source:HGNC Symbol;Acc:HGNC:4452]
87. H3-IX H3-IX 222.85 1959.17
88. RPL7 ENSGALG00000035252 221.14 1944.14 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
89. SLC25A6_1 ENSGALG00000016691 219.42 1929.02 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
90. RPS17 ENSGALG00000002157 215.99 1898.86 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
91. STMN1 ENSGALG00000001475 212.56 1868.71 stathmin 1 [Source:NCBI gene;Acc:396057]
92. HNRNPDL ENSGALG00000023199 210.85 1853.67 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
93. PHB2 ENSGALG00000014567 210.85 1853.67 prohibitin 2 [Source:NCBI gene;Acc:771124]
94. RPS7 ENSGALG00000016392 205.71 1808.49 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
95. EIF4G2 ENSGALG00000005587 203.99 1793.37 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
96. ZNF593 ENSGALG00000000542 200.57 1763.30 zinc finger protein 593 [Source:NCBI gene;Acc:419549]
97. ENSGALG00000002696 ENSGALG00000002696 198.85 1748.18
98. RPS20 ENSGALG00000014432 198.85 1748.18 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
99. RPS25 ENSGALG00000007699 193.71 1702.99 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
100. SEC61G ENSGALG00000037863 193.71 1702.99 Sec61 translocon gamma subunit [Source:NCBI gene;Acc:776639]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA