Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_embryo, section s32.

Sample reads: 113,707. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4348.16 38245.46
2. HBZ ENSGALG00000023740 1249.90 10993.85 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
3. MT-ND5 MT-ND5 1244.01 10942.04
4. gga-mir-3533 ENSGALG00000027736 1153.75 10148.13 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
5. RPLP0 ENSGALG00000023294 1141.98 10044.61 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
6. CIRBP ENSGALG00000030918 1138.06 10010.13 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
7. MT-ATP6 MT-ATP6 1092.93 9613.17
8. RPL23A ENSGALG00000003966 985.01 8663.93 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
9. EEF1A EEF1A 939.88 8266.98
10. RPL35A ENSGALG00000007611, ENSGALG00000041230 890.82 7835.46 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
11. RPS10 ENSGALG00000002813 871.20 7662.88 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
12. RPS23 ENSGALG00000015617 810.37 7127.84 ribosomal protein S23
13. HBG1 HBG1 802.53 7058.88
14. GAPDH ENSGALG00000014442 745.62 6558.31 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
15. RPL15 ENSGALG00000011290 722.08 6351.26 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
16. RPL4 ENSGALG00000007711 686.76 6040.59 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
17. RPLP1 ENSGALG00000030878 663.21 5833.45 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
18. SNRPD1 ENSGALG00000041334 663.21 5833.45 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
19. RPL13 ENSGALG00000006179 623.97 5488.30 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
20. PPIA ENSGALG00000028600 582.76 5125.83 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
21. RPS21 ENSGALG00000005338 559.22 4918.78 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
22. RPS15 ENSGALG00000015195 535.67 4711.64 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
23. MT-ND4 MT-ND4 529.78 4659.83
24. RPL35 ENSGALG00000035677 525.86 4625.35 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
25. RPL27A ENSGALG00000005948 508.20 4470.02 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
26. MDK ENSGALG00000008367 502.31 4418.21 midkine [Source:NCBI gene;Acc:423196]
27. RPS2 ENSGALG00000005490 500.35 4400.97 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
28. RPS12 ENSGALG00000013990 484.65 4262.87 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
29. MT-CYB MT-CYB 476.81 4193.92
30. RPSA 474.84 4176.59 ribosomal protein SA
31. RPS8 ENSGALG00000010124 468.96 4124.87 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
32. gga-mir-3527 gga-mir-3527 468.96 4124.87
33. HBE 459.15 4038.58 hemoglobin subunit epsilon
34. RPL36 ENSGALG00000000474 447.37 3934.97 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
35. RPL27 ENSGALG00000002837 445.41 3917.73 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
36. RPS15A ENSGALG00000006771 443.45 3900.49 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
37. RPL29 ENSGALG00000026978 437.56 3848.68 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
38. RPL12 ENSGALG00000008806 433.64 3814.20 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
39. RPS29 ENSGALG00000012229 433.64 3814.20 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
40. RPL19 ENSGALG00000001658 425.79 3745.16 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
41. GNB2L1 ENSGALG00000000122 419.90 3693.35 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
42. RPS4 RPS4 406.17 3572.58
43. RPS3A ENSGALG00000010077 400.28 3520.77 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
44. RPS28 ENSGALG00000024398 396.36 3486.30 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
45. ALDOC ENSGALG00000026077 394.40 3469.06 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
46. TXN ENSGALG00000015704 392.43 3451.73 thioredoxin [Source:NCBI gene;Acc:396437]
47. RPL7A ENSGALG00000003197 386.55 3400.01 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
48. ANP32B ENSGALG00000037483 384.58 3382.68 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
49. RPS11 ENSGALG00000017299 374.77 3296.39 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
50. RPL37A ENSGALG00000011472 372.81 3279.15 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
51. RPL38 ENSGALG00000001465 370.85 3261.92 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
52. RPL32 ENSGALG00000027142 366.92 3227.35 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
53. MT-CO1 MT-CO1 357.11 3141.06
54. RPS16 ENSGALG00000026490 345.34 3037.53 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
55. ENSGALG00000028649 ENSGALG00000028649 339.45 2985.73
56. PHB2 ENSGALG00000014567 339.45 2985.73 prohibitin 2 [Source:NCBI gene;Acc:771124]
57. RPS6 ENSGALG00000015082 339.45 2985.73 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
58. RPS27A ENSGALG00000036790 335.53 2951.25 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
59. RPL21 ENSGALG00000027035 321.80 2830.48 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
60. TMSB4X ENSGALG00000026383 321.80 2830.48 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
61. MT-ND1 MT-ND1 313.95 2761.44
62. ENO1 ENSGALG00000002377 304.14 2675.15 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
63. MT-ND3 MT-ND3 304.14 2675.15
64. RPL8 ENSGALG00000016232 302.17 2657.82 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
65. RPL26 RPL26 296.29 2606.10
66. HMGN2 HMGN2 294.32 2588.77
67. NME2 ENSGALG00000002932 294.32 2588.77 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
68. RPL37 ENSGALG00000014833 280.59 2468.01 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
69. RPL6 ENSGALG00000004818 274.70 2416.20 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
70. RPS14 ENSGALG00000004588 274.70 2416.20 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
71. TCEB3 ENSGALG00000034625 272.74 2398.96 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
72. EIF5A2 ENSGALG00000009309 259.01 2278.20 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
73. RPL36AL ENSGALG00000004952 257.04 2260.87 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
74. RAN ENSGALG00000002569 251.16 2209.15 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
75. RPL18A 251.16 2209.15 ribosomal protein L18a
76. RPL23 ENSGALG00000001634 245.27 2157.34 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
77. RPL24 ENSGALG00000015339 245.27 2157.34 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
78. PRDX1 ENSGALG00000010243 243.31 2140.10 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
79. LDHB ENSGALG00000035836 241.35 2122.86 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
80. SSR1 ENSGALG00000012798 241.35 2122.86 signal sequence receptor subunit 1 [Source:NCBI gene;Acc:420871]
81. RPL7 ENSGALG00000035252 237.42 2088.29 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
82. RPS7 ENSGALG00000016392 237.42 2088.29 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
83. RPL14 ENSGALG00000043379 233.50 2053.81 ribosomal protein L14
84. ENSGALG00000002696 ENSGALG00000002696 231.54 2036.57
85. SLC25A6_1 ENSGALG00000016691 231.54 2036.57 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
86. HMGN5 ENSGALG00000007131 227.61 2002.01 high mobility group nucleosome binding domain 5, transcript variant X1
87. GPC4 ENSGALG00000006080 223.69 1967.53 glypican 4 [Source:HGNC Symbol;Acc:HGNC:4452]
88. RPL5 ENSGALG00000005922 223.69 1967.53 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
89. ATP5G3 221.72 1950.20 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
90. EEF1D 219.76 1932.96 eukaryotic translation elongation factor 1 delta, transcript variant X13
91. RPS13 ENSGALG00000006096 217.80 1915.72 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
92. STMN1 ENSGALG00000001475 213.88 1881.24 stathmin 1 [Source:NCBI gene;Acc:396057]
93. SET ENSGALG00000004701 206.03 1812.19 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
94. RPL31 ENSGALG00000016775 204.07 1794.95 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
95. H3-IX H3-IX 198.18 1743.15
96. RPS20 ENSGALG00000014432 192.29 1691.34 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
97. SEC61G ENSGALG00000037863 192.29 1691.34 Sec61 translocon gamma subunit [Source:NCBI gene;Acc:776639]
98. CRHOA CRHOA 190.33 1674.10
99. RPS25 ENSGALG00000007699 188.37 1656.86 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
100. HNRNPDL ENSGALG00000023199 182.48 1605.05 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA