Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_embryo, section s30.

Sample reads: 113,710. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 2616.55 23011.22
2. RPS10 ENSGALG00000002813 1395.49 12272.62 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
3. CIRBP ENSGALG00000030918 1234.47 10856.53 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
4. EEF1A EEF1A 1221.06 10738.60
5. RPL23A ENSGALG00000003966 920.49 8095.24 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
6. RPLP0 ENSGALG00000023294 885.60 7788.40 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
7. RPL15 ENSGALG00000011290 861.45 7576.01 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
8. RPL35A ENSGALG00000007611, ENSGALG00000041230 861.45 7576.01 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
9. HBZ ENSGALG00000023740 797.04 7009.56 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
10. RPL13 ENSGALG00000006179 783.62 6891.54 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
11. gga-mir-3533 ENSGALG00000027736 783.62 6891.54 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
12. RPLP1 ENSGALG00000030878 772.89 6797.17 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
13. RPS23 ENSGALG00000015617 754.10 6631.92 ribosomal protein S23
14. GAPDH ENSGALG00000014442 684.33 6018.33 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
15. RPS15 ENSGALG00000015195 676.28 5947.54 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
16. RPS21 ENSGALG00000005338 654.81 5758.72 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
17. RPL29 ENSGALG00000026978 646.76 5687.92 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
18. RPL4 ENSGALG00000007711 630.66 5546.33 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
19. MT-ATP6 MT-ATP6 622.60 5475.45
20. RPSA 619.92 5451.88 ribosomal protein SA
21. SNRPD1 ENSGALG00000041334 587.72 5168.70 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
22. RPS29 ENSGALG00000012229 555.51 4885.43 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
23. PPIA ENSGALG00000028600 544.78 4791.06 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
24. RPL7A ENSGALG00000003197 517.94 4555.02 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
25. HBG1 HBG1 512.58 4507.88
26. RPL27A ENSGALG00000005948 507.21 4460.65 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
27. RPS11 ENSGALG00000017299 496.47 4366.20 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
28. RPL35 ENSGALG00000035677 472.32 4153.81 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
29. RPS2 ENSGALG00000005490 469.64 4130.24 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
30. MT-CYB MT-CYB 466.95 4106.59
31. gga-mir-3527 gga-mir-3527 466.95 4106.59
32. GNB2L1 ENSGALG00000000122 464.27 4083.02 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
33. RPL32 ENSGALG00000027142 458.90 4035.79 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
34. RPL36 ENSGALG00000000474 458.90 4035.79 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
35. RPL27 ENSGALG00000002837 450.85 3965.00 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
36. TXN ENSGALG00000015704 445.48 3917.77 thioredoxin [Source:NCBI gene;Acc:396437]
37. MT-ND4 MT-ND4 442.80 3894.20
38. RPS3A ENSGALG00000010077 442.80 3894.20 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
39. RPS15A ENSGALG00000006771 437.43 3846.97 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
40. MT-ND5 MT-ND5 432.07 3799.83
41. RPL38 ENSGALG00000001465 429.38 3776.18 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
42. RPS12 ENSGALG00000013990 429.38 3776.18 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
43. RPS8 ENSGALG00000010124 429.38 3776.18 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
44. RPL19 ENSGALG00000001658 421.33 3705.38 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
45. RPS27A ENSGALG00000036790 413.28 3634.59 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
46. RPL8 ENSGALG00000016232 410.60 3611.02 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
47. RPL18A 394.50 3469.43 ribosomal protein L18a
48. MDK ENSGALG00000008367 381.08 3351.40 midkine [Source:NCBI gene;Acc:423196]
49. RPL12 ENSGALG00000008806 375.71 3304.18 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
50. RPS4 RPS4 375.71 3304.18
51. RPS16 ENSGALG00000026490 367.66 3233.38 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
52. RPL6 ENSGALG00000004818 354.24 3115.36 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
53. TCEB3 ENSGALG00000034625 354.24 3115.36 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
54. HBE 348.87 3068.13 hemoglobin subunit epsilon
55. RPL14 ENSGALG00000043379 343.51 3020.99 ribosomal protein L14
56. RPL23 ENSGALG00000001634 338.14 2973.77 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
57. RPL24 ENSGALG00000015339 338.14 2973.77 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
58. RPL37 ENSGALG00000014833 338.14 2973.77 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
59. ENSGALG00000028649 ENSGALG00000028649 332.77 2926.54
60. MT-ND3 MT-ND3 330.09 2902.97
61. ALDOC ENSGALG00000026077 324.72 2855.75 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
62. ENO1 ENSGALG00000002377 316.67 2784.95 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
63. PRDX1 ENSGALG00000010243 316.67 2784.95 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
64. RPL37A ENSGALG00000011472 308.62 2714.16 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
65. ATP5G3 305.93 2690.50 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
66. RPL21 ENSGALG00000027035 305.93 2690.50 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
67. RPS6 ENSGALG00000015082 297.88 2619.70 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
68. RPL7 ENSGALG00000035252 287.15 2525.34 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
69. EIF5A2 ENSGALG00000009309 284.47 2501.77 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
70. RPL26 RPL26 284.47 2501.77
71. RPL5 ENSGALG00000005922 279.10 2454.54 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
72. RPS14 ENSGALG00000004588 276.41 2430.88 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
73. RPS17 ENSGALG00000002157 276.41 2430.88 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
74. RPS28 ENSGALG00000024398 276.41 2430.88 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
75. LDHB ENSGALG00000035836 273.73 2407.32 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
76. TMSB4X ENSGALG00000026383 273.73 2407.32 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
77. CRHOA CRHOA 268.36 2360.09
78. RPL36AL ENSGALG00000004952 268.36 2360.09 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
79. NME2 ENSGALG00000002932 254.95 2242.16 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
80. EEF1D 249.58 2194.93 eukaryotic translation elongation factor 1 delta, transcript variant X13
81. RPS7 ENSGALG00000016392 246.89 2171.27 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
82. ANP32B ENSGALG00000037483 238.84 2100.48 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
83. RPL31 ENSGALG00000016775 238.84 2100.48 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
84. RPS13 ENSGALG00000006096 233.48 2053.34 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
85. H3-IX H3-IX 222.74 1958.88
86. RPS20 ENSGALG00000014432 222.74 1958.88 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
87. SLC25A6_1 ENSGALG00000016691 222.74 1958.88 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
88. HNRNPDL ENSGALG00000023199 217.37 1911.66 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
89. STMN1 ENSGALG00000001475 214.69 1888.09 stathmin 1 [Source:NCBI gene;Acc:396057]
90. RPS25 ENSGALG00000007699 201.27 1770.07 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
91. UBB ENSGALG00000004509 201.27 1770.07 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
92. ENSGALG00000002696 ENSGALG00000002696 198.59 1746.50
93. MT-ND1 MT-ND1 195.91 1722.93
94. PHB2 ENSGALG00000014567 195.91 1722.93 prohibitin 2 [Source:NCBI gene;Acc:771124]
95. ENSGALG00000022570 ENSGALG00000022570 193.22 1699.27
96. SSR1 ENSGALG00000012798 190.54 1675.70 signal sequence receptor subunit 1 [Source:NCBI gene;Acc:420871]
97. FKBP4 ENSGALG00000014331 182.49 1604.91 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
98. GPC4 ENSGALG00000006080 182.49 1604.91 glypican 4 [Source:HGNC Symbol;Acc:HGNC:4452]
99. EIF4G2 ENSGALG00000005587 179.80 1581.25 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
100. HMGN2 HMGN2 179.80 1581.25
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA