Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_embryo, section s28.

Sample reads: 113,627. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3206.07 28217.19
2. CIRBP ENSGALG00000030918 1268.89 11167.73 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
3. RPLP0 ENSGALG00000023294 1107.14 9744.14 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
4. gga-mir-3533 ENSGALG00000027736 1074.54 9457.22 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
5. RPL23A ENSGALG00000003966 1060.75 9335.85 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
6. EEF1A EEF1A 965.46 8497.19
7. RPL35A ENSGALG00000007611, ENSGALG00000041230 878.94 7735.71 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
8. MT-ND5 MT-ND5 857.63 7548.15
9. RPS10 ENSGALG00000002813 831.30 7316.42 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
10. GAPDH ENSGALG00000014442 821.27 7228.14 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
11. MT-ATP6 MT-ATP6 816.25 7183.96
12. RPL15 ENSGALG00000011290 794.93 6996.32 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
13. RPS23 ENSGALG00000015617 752.30 6621.13 ribosomal protein S23
14. HBZ ENSGALG00000023740 730.99 6433.57 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
15. RPL4 ENSGALG00000007711 724.72 6378.39 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
16. SNRPD1 ENSGALG00000041334 715.94 6301.12 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
17. RPL13 ENSGALG00000006179 675.82 5948.01 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
18. RPLP1 ENSGALG00000030878 674.57 5937.01 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
19. HBG1 HBG1 646.98 5694.19
20. RPS21 ENSGALG00000005338 603.10 5307.99 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
21. PPIA ENSGALG00000028600 601.84 5296.90 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
22. RPL35 ENSGALG00000035677 570.50 5021.07 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
23. RPS15 ENSGALG00000015195 536.64 4723.06 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
24. RPL29 ENSGALG00000026978 516.58 4546.51 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
25. RPS3A ENSGALG00000010077 497.77 4380.96 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
26. RPS12 ENSGALG00000013990 492.76 4336.87 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
27. RPSA 492.76 4336.87 ribosomal protein SA
28. RPS2 ENSGALG00000005490 487.74 4292.69 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
29. MT-ND4 MT-ND4 463.92 4083.04
30. gga-mir-3527 gga-mir-3527 450.13 3961.67
31. RPL27A ENSGALG00000005948 442.61 3895.49 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
32. RPS4 RPS4 440.10 3873.40
33. MT-CYB MT-CYB 435.08 3829.22
34. MDK ENSGALG00000008367 432.57 3807.13 midkine [Source:NCBI gene;Acc:423196]
35. RPL27 ENSGALG00000002837 431.32 3796.12 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
36. RPS8 ENSGALG00000010124 423.80 3729.94 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
37. HBE 421.29 3707.85 hemoglobin subunit epsilon
38. RPL19 ENSGALG00000001658 417.53 3674.76 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
39. RPL12 ENSGALG00000008806 413.77 3641.66 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
40. TXN ENSGALG00000015704 410.01 3608.57 thioredoxin [Source:NCBI gene;Acc:396437]
41. RPL7A ENSGALG00000003197 408.75 3597.48 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
42. RPS29 ENSGALG00000012229 394.96 3476.11 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
43. RPS15A ENSGALG00000006771 388.69 3420.93 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
44. RPL36 ENSGALG00000000474 387.44 3409.93 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
45. GNB2L1 ENSGALG00000000122 364.87 3211.29 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
46. RPL8 ENSGALG00000016232 356.09 3134.01 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
47. RPL32 ENSGALG00000027142 354.84 3123.01 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
48. TMSB4X ENSGALG00000026383 354.84 3123.01 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
49. RPS11 ENSGALG00000017299 352.33 3100.92 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
50. RPL21 ENSGALG00000027035 349.82 3078.83 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
51. RPS27A ENSGALG00000036790 342.30 3012.64 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
52. RPL37A ENSGALG00000011472 341.04 3001.55 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
53. ALDOC ENSGALG00000026077 328.51 2891.28 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
54. RPL24 ENSGALG00000015339 327.25 2880.19 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
55. TCEB3 ENSGALG00000034625 320.98 2825.00 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
56. RPL26 RPL26 319.73 2814.00
57. MT-CO1 MT-CO1 318.48 2803.00
58. RPL38 ENSGALG00000001465 317.22 2791.91 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
59. RPL6 ENSGALG00000004818 312.21 2747.82 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
60. RPS28 ENSGALG00000024398 312.21 2747.82 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
61. RPS14 ENSGALG00000004588 305.94 2692.63 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
62. ATP5G3 304.68 2681.54 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
63. NME2 ENSGALG00000002932 300.92 2648.45 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
64. EIF5A2 ENSGALG00000009309 297.16 2615.36 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
65. MT-ND3 MT-ND3 297.16 2615.36
66. RPS16 ENSGALG00000026490 295.91 2604.36 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
67. RPL37 ENSGALG00000014833 288.38 2538.08 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
68. ENSGALG00000028649 ENSGALG00000028649 285.88 2516.08
69. ANP32B ENSGALG00000037483 284.62 2504.99 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
70. RPS6 ENSGALG00000015082 284.62 2504.99 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
71. RPL18A 282.11 2482.90 ribosomal protein L18a
72. PHB2 ENSGALG00000014567 280.86 2471.90 prohibitin 2 [Source:NCBI gene;Acc:771124]
73. PRDX1 ENSGALG00000010243 272.08 2394.62 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
74. RAN ENSGALG00000002569 272.08 2394.62 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
75. ENO1 ENSGALG00000002377 260.80 2295.35 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
76. MT-ND1 MT-ND1 260.80 2295.35
77. RPL36AL ENSGALG00000004952 259.54 2284.26 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
78. HMGN2 HMGN2 255.78 2251.17
79. RPS13 ENSGALG00000006096 254.53 2240.16 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
80. RPL14 ENSGALG00000043379 253.28 2229.16 ribosomal protein L14
81. RPL23 ENSGALG00000001634 253.28 2229.16 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
82. CRHOA CRHOA 249.51 2195.98
83. ENSGALG00000002696 ENSGALG00000002696 241.99 2129.80
84. H3-IX H3-IX 241.99 2129.80
85. RPL5 ENSGALG00000005922 240.74 2118.80 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
86. RPL7 ENSGALG00000035252 240.74 2118.80 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
87. HMGN5 ENSGALG00000007131 234.47 2063.61 high mobility group nucleosome binding domain 5, transcript variant X1
88. GPC4 ENSGALG00000006080 231.96 2041.52 glypican 4 [Source:HGNC Symbol;Acc:HGNC:4452]
89. RPS7 ENSGALG00000016392 229.45 2019.43 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
90. LDHB ENSGALG00000035836 228.20 2008.43 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
91. RPL31 ENSGALG00000016775 226.95 1997.43 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
92. SLC25A6_1 ENSGALG00000016691 213.15 1875.97 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
93. SET ENSGALG00000004701 203.12 1787.70 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
94. SSR1 ENSGALG00000012798 199.36 1754.60 signal sequence receptor subunit 1 [Source:NCBI gene;Acc:420871]
95. RPS20 ENSGALG00000014432 196.85 1732.51 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
96. SEC61G ENSGALG00000037863 195.60 1721.51 Sec61 translocon gamma subunit [Source:NCBI gene;Acc:776639]
97. HNRNPDL ENSGALG00000023199 193.09 1699.42 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
98. RPS17 ENSGALG00000002157 186.82 1644.24 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
99. UBB ENSGALG00000004509 185.57 1633.23 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
100. EIF4G2 ENSGALG00000005587 181.81 1600.14 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA