Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_embryo, section s27.

Sample reads: 113,654. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4289.79 37748.38
2. MT-ND5 MT-ND5 1208.30 10632.54
3. MT-ATP6 MT-ATP6 1169.94 10294.99
4. RPLP0 ENSGALG00000023294 1125.19 9901.21 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
5. gga-mir-3533 ENSGALG00000027736 1118.80 9844.98 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
6. CIRBP ENSGALG00000030918 1099.62 9676.20 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
7. EEF1A EEF1A 968.56 8522.93
8. RPL35A ENSGALG00000007611, ENSGALG00000041230 927.00 8157.22 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
9. RPS10 ENSGALG00000002813 917.41 8072.83 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
10. PPIA ENSGALG00000028600 786.35 6919.55 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
11. RPS23 ENSGALG00000015617 770.37 6778.94 ribosomal protein S23
12. RPL15 ENSGALG00000011290 767.18 6750.87 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
13. GAPDH ENSGALG00000014442 757.59 6666.48 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
14. RPL23A ENSGALG00000003966 744.80 6553.93 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
15. RPL4 ENSGALG00000007711 677.67 5963.22 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
16. RPS21 ENSGALG00000005338 652.10 5738.21 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
17. HBG1 HBG1 632.92 5569.43
18. RPS11 ENSGALG00000017299 620.13 5456.89 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
19. RPLP1 ENSGALG00000030878 613.74 5400.66 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
20. SNRPD1 ENSGALG00000041334 578.58 5091.26 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
21. RPL13 ENSGALG00000006179 568.99 5006.88 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
22. RPL29 ENSGALG00000026978 568.99 5006.88 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
23. HBZ ENSGALG00000023740 559.40 4922.49 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
24. RPL35 ENSGALG00000035677 505.06 4444.32 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
25. RPS15A ENSGALG00000006771 501.86 4416.16 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
26. RPL32 ENSGALG00000027142 495.47 4359.93 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
27. RPSA 479.48 4219.23 ribosomal protein SA
28. RPS2 ENSGALG00000005490 473.09 4163.00 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
29. RPS15 ENSGALG00000015195 463.50 4078.61 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
30. RPS29 ENSGALG00000012229 460.31 4050.54 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
31. RPL27A ENSGALG00000005948 450.72 3966.15 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
32. GNB2L1 ENSGALG00000000122 441.13 3881.76 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
33. RPL7A ENSGALG00000003197 441.13 3881.76 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
34. HBE 437.93 3853.60 hemoglobin subunit epsilon
35. MT-CYB MT-CYB 437.93 3853.60
36. RPS12 ENSGALG00000013990 425.14 3741.06 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
37. RPL19 ENSGALG00000001658 421.95 3712.99 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
38. MT-ND4 MT-ND4 418.75 3684.83
39. RPS3A ENSGALG00000010077 418.75 3684.83 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
40. RPL27 ENSGALG00000002837 415.55 3656.67 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
41. RPL8 ENSGALG00000016232 415.55 3656.67 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
42. gga-mir-3527 gga-mir-3527 415.55 3656.67
43. RPL12 ENSGALG00000008806 405.96 3572.28 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
44. RPL6 ENSGALG00000004818 402.77 3544.21 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
45. RPS6 ENSGALG00000015082 396.37 3487.89 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
46. TXN ENSGALG00000015704 383.59 3375.43 thioredoxin [Source:NCBI gene;Acc:396437]
47. NME2 ENSGALG00000002932 380.39 3347.27 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
48. RPS27A ENSGALG00000036790 377.19 3319.12 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
49. RPL36 ENSGALG00000000474 374.00 3291.05 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
50. RPS4 RPS4 374.00 3291.05
51. RPL38 ENSGALG00000001465 358.02 3150.43 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
52. ENO1 ENSGALG00000002377 348.43 3066.04 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
53. RPL21 ENSGALG00000027035 348.43 3066.04 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
54. RPS8 ENSGALG00000010124 348.43 3066.04 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
55. RPL37A ENSGALG00000011472 338.84 2981.65 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
56. RPL26 RPL26 329.25 2897.26
57. RPL37 ENSGALG00000014833 329.25 2897.26 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
58. HMGN5 ENSGALG00000007131 326.05 2869.11 high mobility group nucleosome binding domain 5, transcript variant X1
59. ALDOC ENSGALG00000026077 322.85 2840.95 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
60. EIF5A2 ENSGALG00000009309 322.85 2840.95 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
61. MDK ENSGALG00000008367 319.66 2812.88 midkine [Source:NCBI gene;Acc:423196]
62. RPL24 ENSGALG00000015339 313.26 2756.56 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
63. ENSGALG00000028649 ENSGALG00000028649 310.07 2728.49
64. TCEB3 ENSGALG00000034625 306.87 2700.33 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
65. RPL7 ENSGALG00000035252 303.67 2672.17 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
66. ENSGALG00000018384 ENSGALG00000018384 300.48 2644.10
67. RPS14 ENSGALG00000004588 300.48 2644.10 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
68. PRDX1 ENSGALG00000010243 287.69 2531.55 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
69. RPL14 ENSGALG00000043379 287.69 2531.55 ribosomal protein L14
70. MT-CO1 MT-CO1 281.30 2475.32
71. RPLP2 ENSGALG00000034811 281.30 2475.32 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
72. MT-ND3 MT-ND3 278.10 2447.16
73. ATP5G3 274.90 2419.01 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
74. LDHB ENSGALG00000035836 274.90 2419.01 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
75. RPL18A 274.90 2419.01 ribosomal protein L18a
76. HMGN2 HMGN2 268.51 2362.78
77. RPS16 ENSGALG00000026490 268.51 2362.78 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
78. RPS28 ENSGALG00000024398 268.51 2362.78 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
79. TMSB4X ENSGALG00000026383 268.51 2362.78 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
80. H3-IX H3-IX 265.31 2334.62
81. PHB2 ENSGALG00000014567 265.31 2334.62 prohibitin 2 [Source:NCBI gene;Acc:771124]
82. EEF1D 258.92 2278.39 eukaryotic translation elongation factor 1 delta, transcript variant X13
83. RPS7 ENSGALG00000016392 255.73 2250.32 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
84. RPS25 ENSGALG00000007699 252.53 2222.16 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
85. RPS20 ENSGALG00000014432 249.33 2194.00 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
86. RPL23 ENSGALG00000001634 246.14 2165.93 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
87. RPL5 ENSGALG00000005922 239.74 2109.61 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
88. CRHOA CRHOA 233.35 2053.38
89. RPL36AL ENSGALG00000004952 233.35 2053.38 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
90. SLC25A6_1 ENSGALG00000016691 233.35 2053.38 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
91. RPL31 ENSGALG00000016775 226.96 1997.15 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
92. ENSGALG00000002696 ENSGALG00000002696 220.56 1940.84
93. RPS13 ENSGALG00000006096 214.17 1884.61 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
94. SEC61G ENSGALG00000037863 214.17 1884.61 Sec61 translocon gamma subunit [Source:NCBI gene;Acc:776639]
95. STMN1 ENSGALG00000001475 214.17 1884.61 stathmin 1 [Source:NCBI gene;Acc:396057]
96. RPS17 ENSGALG00000002157 207.78 1828.38 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
97. MT-ND1 MT-ND1 198.19 1743.99
98. UBB ENSGALG00000004509 198.19 1743.99 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
99. FKBP4 ENSGALG00000014331 188.60 1659.60 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
100. HSPA8 ENSGALG00000006512 188.60 1659.60 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA