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Experiment Chicken_E3_embryo, section s25.

Sample reads: 113,686. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3658.76 32184.04
2. MT-ND5 MT-ND5 1261.32 11095.12
3. CIRBP ENSGALG00000030918 1201.04 10564.87 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
4. EEF1A EEF1A 1146.94 10088.98
5. MT-ATP6 MT-ATP6 1120.66 9857.81
6. gga-mir-3533 ENSGALG00000027736 1111.38 9776.18 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
7. RPLP0 ENSGALG00000023294 1097.47 9653.82 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
8. RPL15 ENSGALG00000011290 921.26 8103.80 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
9. GAPDH ENSGALG00000014442 885.71 7791.09 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
10. RPS23 ENSGALG00000015617 850.15 7478.29 ribosomal protein S23
11. RPL23A ENSGALG00000003966 813.06 7152.03 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
12. RPS10 ENSGALG00000002813 797.60 7016.04 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
13. RPL35A ENSGALG00000007611, ENSGALG00000041230 738.86 6499.33 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
14. SNRPD1 ENSGALG00000041334 704.86 6200.25 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
15. RPLP1 ENSGALG00000030878 695.58 6118.62 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
16. PPIA ENSGALG00000028600 669.30 5887.45 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
17. RPL13 ENSGALG00000006179 667.76 5873.91 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
18. RPL4 ENSGALG00000007711 609.02 5357.20 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
19. RPSA 575.01 5058.04 ribosomal protein SA
20. RPS11 ENSGALG00000017299 567.29 4990.13 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
21. RPS2 ENSGALG00000005490 541.01 4758.96 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
22. GNB2L1 ENSGALG00000000122 537.92 4731.78 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
23. RPS21 ENSGALG00000005338 531.73 4677.33 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
24. HBG1 HBG1 508.55 4473.43
25. RPS15 ENSGALG00000015195 508.55 4473.43 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
26. RPS12 ENSGALG00000013990 494.64 4351.07 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
27. RPL35 ENSGALG00000035677 486.91 4283.07 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
28. RPL29 ENSGALG00000026978 483.82 4255.89 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
29. HBZ ENSGALG00000023740 473.00 4160.71 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
30. MT-CYB MT-CYB 455.99 4011.09
31. RPL37A ENSGALG00000011472 452.90 3983.90 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
32. MT-ND4 MT-ND4 438.99 3861.55
33. MDK ENSGALG00000008367 435.90 3834.37 midkine [Source:NCBI gene;Acc:423196]
34. RPS3A ENSGALG00000010077 432.81 3807.18 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
35. RPL7A ENSGALG00000003197 429.71 3779.92 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
36. RPL27A ENSGALG00000005948 425.08 3739.19 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
37. RPL19 ENSGALG00000001658 420.44 3698.37 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
38. RPS29 ENSGALG00000012229 418.89 3684.74 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
39. RPL12 ENSGALG00000008806 415.80 3657.56 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
40. RPS27A ENSGALG00000036790 411.17 3616.83 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
41. RPL8 ENSGALG00000016232 409.62 3603.20 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
42. RPS6 ENSGALG00000015082 404.98 3562.38 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
43. RPL27 ENSGALG00000002837 395.71 3480.84 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
44. RPL6 ENSGALG00000004818 391.07 3440.02 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
45. RPS8 ENSGALG00000010124 389.53 3426.47 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
46. RPL38 ENSGALG00000001465 381.80 3358.48 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
47. RPS15A ENSGALG00000006771 381.80 3358.48 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
48. RPL36 ENSGALG00000000474 380.25 3344.84 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
49. RPL32 ENSGALG00000027142 378.71 3331.30 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
50. RPS4 RPS4 374.07 3290.48
51. gga-mir-3527 gga-mir-3527 370.98 3263.30
52. EIF5A2 ENSGALG00000009309 355.52 3127.31 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
53. ENSGALG00000028649 ENSGALG00000028649 349.34 3072.95
54. RPL21 ENSGALG00000027035 344.70 3032.13 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
55. RPL37 ENSGALG00000014833 338.52 2977.77 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
56. NME2 ENSGALG00000002932 336.97 2964.13 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
57. RPS28 ENSGALG00000024398 330.79 2909.77 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
58. ANP32B ENSGALG00000037483 326.15 2868.96 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
59. ATP5G3 326.15 2868.96 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
60. RPL26 RPL26 324.60 2855.32
61. TXN ENSGALG00000015704 319.97 2814.59 thioredoxin [Source:NCBI gene;Acc:396437]
62. RPL14 ENSGALG00000043379 316.88 2787.41 ribosomal protein L14
63. RPS16 ENSGALG00000026490 302.96 2664.97 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
64. TMSB4X ENSGALG00000026383 296.78 2610.61 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
65. MT-CO1 MT-CO1 293.69 2583.42
66. HBE 292.14 2569.79 hemoglobin subunit epsilon
67. ENO1 ENSGALG00000002377 289.05 2542.61 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
68. PHB2 ENSGALG00000014567 285.96 2515.43 prohibitin 2 [Source:NCBI gene;Acc:771124]
69. RPS14 ENSGALG00000004588 284.42 2501.88 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
70. ALDOC ENSGALG00000026077 282.87 2488.25 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
71. MT-ND1 MT-ND1 282.87 2488.25
72. RPL24 ENSGALG00000015339 281.32 2474.61 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
73. TCEB3 ENSGALG00000034625 273.60 2406.70 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
74. RPL23 ENSGALG00000001634 270.50 2379.44 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
75. HMGN5 ENSGALG00000007131 258.14 2270.71 high mobility group nucleosome binding domain 5, transcript variant X1
76. HMGN2 HMGN2 251.95 2216.26
77. RPS7 ENSGALG00000016392 251.95 2216.26 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
78. RPL18A 247.32 2175.53 ribosomal protein L18a
79. MT-ND3 MT-ND3 245.77 2161.90
80. RPL5 ENSGALG00000005922 241.13 2121.08 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
81. EIF4G2 ENSGALG00000005587 234.95 2066.72 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
82. STMN1 ENSGALG00000001475 233.41 2053.18 stathmin 1 [Source:NCBI gene;Acc:396057]
83. LDHB ENSGALG00000035836 231.86 2039.54 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
84. H3-IX H3-IX 228.77 2012.36
85. EEF1D 227.22 1998.73 eukaryotic translation elongation factor 1 delta, transcript variant X13
86. RPL7 ENSGALG00000035252 227.22 1998.73 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
87. ENSGALG00000002696 ENSGALG00000002696 225.68 1985.18
88. RPL36AL ENSGALG00000004952 221.04 1944.36 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
89. RPS17 ENSGALG00000002157 219.49 1930.73 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
90. ENSGALG00000022570 ENSGALG00000022570 217.95 1917.18
91. PRDX1 ENSGALG00000010243 216.40 1903.55 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
92. RPS13 ENSGALG00000006096 216.40 1903.55 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
93. CRHOA CRHOA 213.31 1876.37
94. RPLP2 ENSGALG00000034811 213.31 1876.37 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
95. SLC25A6_1 ENSGALG00000016691 205.58 1808.37 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
96. GPC4 ENSGALG00000006080 200.95 1767.64 glypican 4 [Source:HGNC Symbol;Acc:HGNC:4452]
97. RPS20 ENSGALG00000014432 200.95 1767.64 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
98. RPS25 ENSGALG00000007699 200.95 1767.64 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
99. HNRNPDL ENSGALG00000023199 191.67 1686.01 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
100. RPL31 ENSGALG00000016775 190.13 1672.47 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA