Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_embryo, section s24.

Sample reads: 113,696. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4235.87 37258.39
2. EEF1A EEF1A 1442.88 12691.46
3. MT-ATP6 MT-ATP6 1193.86 10501.10
4. CIRBP ENSGALG00000030918 1173.11 10318.59 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
5. RPLP0 ENSGALG00000023294 1068.12 9395.10 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
6. gga-mir-3533 ENSGALG00000027736 990.00 8707.96 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
7. MT-ND5 MT-ND5 947.27 8332.11
8. RPL35A ENSGALG00000007611, ENSGALG00000041230 931.40 8192.52 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
9. RPS10 ENSGALG00000002813 850.84 7483.92 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
10. RPL23A ENSGALG00000003966 847.17 7451.64 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
11. RPL15 ENSGALG00000011290 771.49 6785.97 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
12. GAPDH ENSGALG00000014442 689.70 6066.55 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
13. RPSA 672.61 5916.23 ribosomal protein SA
14. RPS23 ENSGALG00000015617 660.41 5808.92 ribosomal protein S23
15. RPL4 ENSGALG00000007711 632.33 5561.93 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
16. RPLP1 ENSGALG00000030878 601.81 5293.47 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
17. PPIA ENSGALG00000028600 598.15 5261.28 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
18. SNRPD1 ENSGALG00000041334 581.06 5110.96 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
19. RPL13 ENSGALG00000006179 567.63 4992.83 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
20. RPS15 ENSGALG00000015195 537.11 4724.38 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
21. RPS21 ENSGALG00000005338 511.48 4498.94 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
22. MT-ND4 MT-ND4 502.93 4423.73
23. RPS11 ENSGALG00000017299 500.49 4402.27 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
24. RPL27A ENSGALG00000005948 499.27 4391.54 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
25. RPS2 ENSGALG00000005490 483.40 4251.95 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
26. MDK ENSGALG00000008367 478.52 4209.03 midkine [Source:NCBI gene;Acc:423196]
27. GNB2L1 ENSGALG00000000122 473.64 4166.10 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
28. RPL35 ENSGALG00000035677 457.77 4026.51 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
29. RPL29 ENSGALG00000026978 440.68 3876.19 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
30. MT-CYB MT-CYB 437.02 3843.99
31. HBG1 HBG1 429.69 3779.52
32. gga-mir-3527 gga-mir-3527 413.82 3639.93
33. RPL27 ENSGALG00000002837 412.60 3629.20 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
34. RPS29 ENSGALG00000012229 411.38 3618.47 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
35. RPS15A ENSGALG00000006771 407.72 3586.27 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
36. RPL19 ENSGALG00000001658 402.84 3543.35 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
37. RPL6 ENSGALG00000004818 400.39 3521.80 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
38. RPL7A ENSGALG00000003197 399.17 3511.07 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
39. RPS3A ENSGALG00000010077 397.95 3500.34 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
40. RPS8 ENSGALG00000010124 397.95 3500.34 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
41. RPS12 ENSGALG00000013990 396.73 3489.61 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
42. RPL37A ENSGALG00000011472 395.51 3478.88 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
43. RPL38 ENSGALG00000001465 384.52 3382.21 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
44. RPL36 ENSGALG00000000474 380.86 3350.02 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
45. TXN ENSGALG00000015704 373.54 3285.63 thioredoxin [Source:NCBI gene;Acc:396437]
46. RPS27A ENSGALG00000036790 357.67 3146.04 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
47. HBZ ENSGALG00000023740 352.79 3103.11 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
48. RPS28 ENSGALG00000024398 347.90 3060.10 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
49. RPL32 ENSGALG00000027142 344.24 3027.91 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
50. ALDOC ENSGALG00000026077 336.92 2963.52 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
51. RPL24 ENSGALG00000015339 336.92 2963.52 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
52. RPS4 RPS4 335.70 2952.79
53. RPL12 ENSGALG00000008806 332.03 2920.51 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
54. ENSGALG00000028649 ENSGALG00000028649 321.05 2823.93
55. RPL8 ENSGALG00000016232 318.61 2802.47 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
56. RPL26 RPL26 316.16 2780.92
57. NME2 ENSGALG00000002932 314.94 2770.19 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
58. MT-CO1 MT-CO1 313.72 2759.46
59. RPS6 ENSGALG00000015082 300.30 2641.42 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
60. ANP32B ENSGALG00000037483 299.07 2630.60 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
61. ENO1 ENSGALG00000002377 297.85 2619.87 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
62. HMGN2 HMGN2 290.53 2555.48
63. RPS16 ENSGALG00000026490 290.53 2555.48 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
64. MT-ND3 MT-ND3 280.76 2469.54
65. RPL14 ENSGALG00000043379 278.32 2448.08 ribosomal protein L14
66. TMSB4X ENSGALG00000026383 277.10 2437.35 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
67. TCEB3 ENSGALG00000034625 274.66 2415.89 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
68. RPL21 ENSGALG00000027035 273.44 2405.16 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
69. RPL23 ENSGALG00000001634 273.44 2405.16 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
70. RPL18A 269.78 2372.96 ribosomal protein L18a
71. PRDX1 ENSGALG00000010243 267.34 2351.50 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
72. RPL37 ENSGALG00000014833 267.34 2351.50 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
73. RPS14 ENSGALG00000004588 266.12 2340.77 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
74. HBE 264.89 2329.95 hemoglobin subunit epsilon
75. MT-ND1 MT-ND1 264.89 2329.95
76. RPS13 ENSGALG00000006096 261.23 2297.76 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
77. EIF5A2 ENSGALG00000009309 260.01 2287.03 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
78. ATP5G3 256.35 2254.83 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
79. LDHB ENSGALG00000035836 255.13 2244.10 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
80. PHB2 ENSGALG00000014567 245.36 2158.17 prohibitin 2 [Source:NCBI gene;Acc:771124]
81. RPL5 ENSGALG00000005922 244.14 2147.44 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
82. RPL36AL ENSGALG00000004952 242.92 2136.71 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
83. HMGN5 ENSGALG00000007131 240.48 2115.24 high mobility group nucleosome binding domain 5, transcript variant X1
84. CRHOA CRHOA 231.94 2040.13
85. RPS25 ENSGALG00000007699 231.94 2040.13 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
86. RPL7 ENSGALG00000035252 229.49 2018.58 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
87. RPS7 ENSGALG00000016392 227.05 1997.11 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
88. EIF4G2 ENSGALG00000005587 224.61 1975.65 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
89. RPS17 ENSGALG00000002157 222.17 1954.19 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
90. STMN1 ENSGALG00000001475 220.95 1943.46 stathmin 1 [Source:NCBI gene;Acc:396057]
91. RPL31 ENSGALG00000016775 206.30 1814.60 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
92. FKBP4 ENSGALG00000014331 201.42 1771.67 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
93. EEF1D 200.20 1760.94 eukaryotic translation elongation factor 1 delta, transcript variant X13
94. ENSGALG00000002696 ENSGALG00000002696 200.20 1760.94
95. H3-IX H3-IX 198.98 1750.21
96. GPC4 ENSGALG00000006080 197.76 1739.48 glypican 4 [Source:HGNC Symbol;Acc:HGNC:4452]
97. RPS20 ENSGALG00000014432 191.65 1685.74 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
98. SET ENSGALG00000004701 191.65 1685.74 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
99. ENSGALG00000028992 ENSGALG00000028992 189.21 1664.28
100. RAN ENSGALG00000002569 185.55 1632.08 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA