Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_embryo, section s23.

Sample reads: 113,745. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4224.42 37139.27
2. EEF1A EEF1A 1233.24 10842.11
3. CIRBP ENSGALG00000030918 1226.10 10779.34 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
4. gga-mir-3533 ENSGALG00000027736 1042.27 9163.19 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
5. RPS10 ENSGALG00000002813 929.84 8174.75 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
6. RPL35A ENSGALG00000007611, ENSGALG00000041230 928.05 8159.01 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
7. RPLP1 ENSGALG00000030878 858.45 7547.12 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
8. RPS23 ENSGALG00000015617 858.45 7547.12 ribosomal protein S23
9. MT-ATP6 MT-ATP6 844.17 7421.58
10. RPL15 ENSGALG00000011290 837.03 7358.81 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
11. RPLP0 ENSGALG00000023294 815.61 7170.49 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
12. RPL23A ENSGALG00000003966 781.70 6872.37 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
13. GAPDH ENSGALG00000014442 703.18 6182.05 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
14. RPL4 ENSGALG00000007711 674.62 5930.97 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
15. MT-ND5 MT-ND5 660.34 5805.42
16. RPL13 ENSGALG00000006179 630.00 5538.69 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
17. RPS15 ENSGALG00000015195 626.43 5507.30 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
18. RPS11 ENSGALG00000017299 606.80 5334.72 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
19. RPL29 ENSGALG00000026978 592.52 5209.18 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
20. RPL35 ENSGALG00000035677 588.96 5177.88 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
21. SNRPD1 ENSGALG00000041334 588.96 5177.88 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
22. RPS21 ENSGALG00000005338 571.11 5020.95 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
23. RPSA 503.29 4424.71 ribosomal protein SA
24. PPIA ENSGALG00000028600 496.15 4361.94 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
25. RPS3A ENSGALG00000010077 494.37 4346.29 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
26. RPS2 ENSGALG00000005490 480.09 4220.74 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
27. RPS29 ENSGALG00000012229 474.73 4173.62 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
28. RPS12 ENSGALG00000013990 451.53 3969.66 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
29. RPS15A ENSGALG00000006771 449.75 3954.01 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
30. RPL38 ENSGALG00000001465 442.61 3891.24 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
31. RPS8 ENSGALG00000010124 442.61 3891.24 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
32. RPL27A ENSGALG00000005948 439.04 3859.85 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
33. GNB2L1 ENSGALG00000000122 435.47 3828.46 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
34. RPL7A ENSGALG00000003197 430.12 3781.43 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
35. RPL27 ENSGALG00000002837 428.33 3765.69 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
36. MT-ND4 MT-ND4 421.19 3702.92
37. MDK ENSGALG00000008367 410.48 3608.76 midkine [Source:NCBI gene;Acc:423196]
38. RPL8 ENSGALG00000016232 410.48 3608.76 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
39. RPL32 ENSGALG00000027142 394.42 3467.57 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
40. RPL37A ENSGALG00000011472 394.42 3467.57 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
41. RPL19 ENSGALG00000001658 387.28 3404.80 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
42. RPS6 ENSGALG00000015082 385.50 3389.15 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
43. RPL6 ENSGALG00000004818 380.14 3342.03 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
44. RPL36 ENSGALG00000000474 373.01 3279.34 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
45. RPS16 ENSGALG00000026490 373.01 3279.34 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
46. gga-mir-3527 gga-mir-3527 364.08 3200.83
47. MT-CYB MT-CYB 356.94 3138.06
48. TXN ENSGALG00000015704 356.94 3138.06 thioredoxin [Source:NCBI gene;Acc:396437]
49. NME2 ENSGALG00000002932 355.16 3122.41 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
50. RPL12 ENSGALG00000008806 348.02 3059.64 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
51. RPS4 RPS4 342.66 3012.52
52. RPL18A 333.74 2934.10 ribosomal protein L18a
53. RPL26 RPL26 333.74 2934.10
54. RPS27A ENSGALG00000036790 331.96 2918.45 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
55. TCEB3 ENSGALG00000034625 323.03 2839.94 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
56. RPL21 ENSGALG00000027035 317.68 2792.91 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
57. RPL23 ENSGALG00000001634 314.11 2761.52 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
58. ATP5G3 310.54 2730.13 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
59. RPL37 ENSGALG00000014833 306.97 2698.75 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
60. RPS28 ENSGALG00000024398 303.40 2667.36 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
61. RPL24 ENSGALG00000015339 294.48 2588.94 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
62. RPS17 ENSGALG00000002157 294.48 2588.94 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
63. LDHB ENSGALG00000035836 289.12 2541.82 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
64. ENO1 ENSGALG00000002377 285.55 2510.43 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
65. RPL14 ENSGALG00000043379 281.98 2479.05 ribosomal protein L14
66. EIF4G2 ENSGALG00000005587 280.20 2463.40 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
67. MT-CO1 MT-CO1 278.42 2447.75
68. EEF1D 273.06 2400.63 eukaryotic translation elongation factor 1 delta, transcript variant X13
69. EIF5A2 ENSGALG00000009309 273.06 2400.63 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
70. ANP32B ENSGALG00000037483 269.49 2369.24 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
71. HBG1 HBG1 269.49 2369.24
72. HBZ ENSGALG00000023740 269.49 2369.24 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
73. HMGN5 ENSGALG00000007131 269.49 2369.24 high mobility group nucleosome binding domain 5, transcript variant X1
74. PRDX1 ENSGALG00000010243 265.92 2337.85 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
75. H3-IX H3-IX 264.14 2322.20
76. SLC25A6_1 ENSGALG00000016691 260.57 2290.82 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
77. RPL36AL ENSGALG00000004952 258.78 2275.08 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
78. ENSGALG00000028649 ENSGALG00000028649 249.86 2196.66
79. RPS13 ENSGALG00000006096 249.86 2196.66 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
80. RPS14 ENSGALG00000004588 249.86 2196.66 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
81. HMGN2 HMGN2 244.51 2149.63
82. PHB2 ENSGALG00000014567 239.15 2102.50 prohibitin 2 [Source:NCBI gene;Acc:771124]
83. RPS20 ENSGALG00000014432 239.15 2102.50 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
84. UBB ENSGALG00000004509 230.23 2024.08 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
85. RPS7 ENSGALG00000016392 228.44 2008.35 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
86. MT-ND1 MT-ND1 226.66 1992.70
87. SEC61G ENSGALG00000037863 226.66 1992.70 Sec61 translocon gamma subunit [Source:NCBI gene;Acc:776639]
88. TMSB4X ENSGALG00000026383 224.87 1976.96 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
89. RPL31 ENSGALG00000016775 215.95 1898.54 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
90. RPL7 ENSGALG00000035252 215.95 1898.54 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
91. RAN ENSGALG00000002569 207.03 1820.12 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
92. RPL5 ENSGALG00000005922 207.03 1820.12 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
93. HNRNPDL ENSGALG00000023199 205.24 1804.38 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
94. RPS25 ENSGALG00000007699 205.24 1804.38 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
95. ENSGALG00000002696 ENSGALG00000002696 203.46 1788.73
96. STMN1 ENSGALG00000001475 196.32 1725.96 stathmin 1 [Source:NCBI gene;Acc:396057]
97. GPC4 ENSGALG00000006080 190.96 1678.84 glypican 4 [Source:HGNC Symbol;Acc:HGNC:4452]
98. SET ENSGALG00000004701 190.96 1678.84 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
99. CRHOA CRHOA 189.18 1663.19
100. MT-ND3 MT-ND3 189.18 1663.19
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA