Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_embryo, section s19.

Sample reads: 113,771. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3935.95 34596.56
2. CIRBP ENSGALG00000030918 1202.77 10572.21 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
3. EEF1A EEF1A 1153.79 10141.68
4. RPLP0 ENSGALG00000023294 1092.84 9605.94 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
5. RPL35A ENSGALG00000007611, ENSGALG00000041230 1021.00 8974.48 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
6. gga-mir-3533 ENSGALG00000027736 939.36 8256.87 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
7. RPS10 ENSGALG00000002813 881.67 7749.78 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
8. RPL15 ENSGALG00000011290 851.19 7481.86 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
9. PPIA ENSGALG00000028600 813.10 7147.06 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
10. GAPDH ENSGALG00000014442 812.01 7137.48 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
11. RPL23A ENSGALG00000003966 808.74 7108.73 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
12. RPS23 ENSGALG00000015617 803.30 7060.92 ribosomal protein S23
13. MT-ATP6 MT-ATP6 769.56 6764.35
14. SNRPD1 ENSGALG00000041334 724.93 6372.05 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
15. RPLP1 ENSGALG00000030878 699.89 6151.95 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
16. RPL13 ENSGALG00000006179 680.30 5979.76 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
17. RPL4 ENSGALG00000007711 672.68 5912.78 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
18. MT-ND5 MT-ND5 645.47 5673.61
19. RPS11 ENSGALG00000017299 611.73 5377.04 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
20. RPS21 ENSGALG00000005338 583.43 5128.28 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
21. RPL35 ENSGALG00000035677 581.25 5109.12 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
22. RPL29 ENSGALG00000026978 552.95 4860.37 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
23. RPS3A ENSGALG00000010077 523.56 4602.03 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
24. GNB2L1 ENSGALG00000000122 521.38 4582.87 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
25. RPS2 ENSGALG00000005490 519.21 4563.80 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
26. RPS15 ENSGALG00000015195 512.67 4506.31 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
27. RPS12 ENSGALG00000013990 482.20 4238.48 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
28. RPL7A ENSGALG00000003197 481.11 4228.90 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
29. RPS8 ENSGALG00000010124 478.93 4209.74 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
30. RPL37A ENSGALG00000011472 466.96 4104.53 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
31. RPL27A ENSGALG00000005948 463.69 4075.78 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
32. RPL38 ENSGALG00000001465 461.52 4056.71 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
33. RPS15A ENSGALG00000006771 445.19 3913.17 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
34. RPL32 ENSGALG00000027142 438.66 3855.77 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
35. RPSA 435.39 3827.03 ribosomal protein SA
36. RPL19 ENSGALG00000001658 425.60 3740.98 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
37. RPL27 ENSGALG00000002837 425.60 3740.98 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
38. RPS29 ENSGALG00000012229 424.51 3731.40 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
39. TCEB3 ENSGALG00000034625 414.71 3645.25 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
40. RPS27A ENSGALG00000036790 400.56 3520.88 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
41. RPL12 ENSGALG00000008806 396.21 3482.64 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
42. MDK ENSGALG00000008367 389.68 3425.24 midkine [Source:NCBI gene;Acc:423196]
43. NME2 ENSGALG00000002932 384.23 3377.34 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
44. MT-ND4 MT-ND4 383.15 3367.85
45. RPS16 ENSGALG00000026490 383.15 3367.85 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
46. RPL6 ENSGALG00000004818 380.97 3348.68 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
47. RPL8 ENSGALG00000016232 380.97 3348.68 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
48. TXN ENSGALG00000015704 377.70 3319.94 thioredoxin [Source:NCBI gene;Acc:396437]
49. gga-mir-3527 gga-mir-3527 375.53 3300.87
50. RPL26 RPL26 374.44 3291.29
51. RPL36 ENSGALG00000000474 371.17 3262.54 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
52. RPS28 ENSGALG00000024398 367.91 3233.89 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
53. EIF5A2 ENSGALG00000009309 363.55 3195.56 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
54. RPS4 RPS4 355.93 3128.58
55. RPL23 ENSGALG00000001634 350.49 3080.77 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
56. ATP5G3 346.14 3042.53 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
57. MT-CYB MT-CYB 339.61 2985.13
58. RPL21 ENSGALG00000027035 336.34 2956.39 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
59. RPL24 ENSGALG00000015339 317.84 2793.78 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
60. RPL37 ENSGALG00000014833 317.84 2793.78 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
61. RPS6 ENSGALG00000015082 314.57 2765.03 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
62. EEF1D 310.22 2726.80 eukaryotic translation elongation factor 1 delta, transcript variant X13
63. RPL14 ENSGALG00000043379 309.13 2717.22 ribosomal protein L14
64. RPL36AL ENSGALG00000004952 299.33 2631.08 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
65. RPL18A 297.16 2612.00 ribosomal protein L18a
66. ANP32B ENSGALG00000037483 290.62 2554.52 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
67. PRDX1 ENSGALG00000010243 288.45 2535.44 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
68. LDHB ENSGALG00000035836 286.27 2516.28 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
69. RPS13 ENSGALG00000006096 280.83 2468.46 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
70. HMGN2 HMGN2 275.39 2420.65
71. RPS14 ENSGALG00000004588 275.39 2420.65 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
72. MT-ND3 MT-ND3 274.30 2411.07
73. ENSGALG00000028649 ENSGALG00000028649 267.77 2353.67
74. MT-CO1 MT-CO1 267.77 2353.67
75. SLC25A6_1 ENSGALG00000016691 255.79 2248.37 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
76. PHB2 ENSGALG00000014567 253.62 2229.29 prohibitin 2 [Source:NCBI gene;Acc:771124]
77. RPL5 ENSGALG00000005922 251.44 2210.13 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
78. H3-IX H3-IX 243.82 2143.15
79. RPL7 ENSGALG00000035252 243.82 2143.15 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
80. ENO1 ENSGALG00000002377 241.64 2123.99 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
81. RPL31 ENSGALG00000016775 240.55 2114.41 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
82. RPS20 ENSGALG00000014432 239.47 2104.91 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
83. TMSB4X ENSGALG00000026383 239.47 2104.91 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
84. PKM ENSGALG00000001992 236.20 2076.17 pyruvate kinase M1/2 [Source:NCBI gene;Acc:396456]
85. RPS17 ENSGALG00000002157 234.02 2057.01 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
86. ALDOC ENSGALG00000026077 229.67 2018.77 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
87. RPS25 ENSGALG00000007699 223.14 1961.38 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
88. HMGN5 ENSGALG00000007131 220.96 1942.21 high mobility group nucleosome binding domain 5, transcript variant X1
89. RPS7 ENSGALG00000016392 220.96 1942.21 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
90. RPLP2 ENSGALG00000034811 216.61 1903.98 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
91. ENSGALG00000002696 ENSGALG00000002696 214.43 1884.82
92. FKBP4 ENSGALG00000014331 213.34 1875.23 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
93. RAN ENSGALG00000002569 210.08 1846.58 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
94. EIF4G2 ENSGALG00000005587 208.99 1837.00 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
95. MT-ND1 MT-ND1 206.81 1817.84
96. CRHOA CRHOA 205.72 1808.26
97. HNRNPDL ENSGALG00000023199 202.46 1779.60 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
98. STMN1 ENSGALG00000001475 201.37 1770.02 stathmin 1 [Source:NCBI gene;Acc:396057]
99. ENSGALG00000028992 ENSGALG00000028992 198.10 1741.28
100. CCT4 ENSGALG00000008812 197.02 1731.78 chaperonin containing TCP1 subunit 4 [Source:NCBI gene;Acc:395414]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA