Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_embryo, section s18.

Sample reads: 113,742. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3228.82 28388.04
2. EEF1A EEF1A 1471.62 12938.60
3. CIRBP ENSGALG00000030918 1349.76 11867.20 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
4. gga-mir-3533 ENSGALG00000027736 1097.67 9650.80 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
5. RPL15 ENSGALG00000011290 1058.60 9307.30 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
6. RPL35A ENSGALG00000007611, ENSGALG00000041230 1039.99 9143.68 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
7. RPLP0 ENSGALG00000023294 1009.30 8873.85 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
8. RPL23A ENSGALG00000003966 959.99 8440.31 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
9. RPS10 ENSGALG00000002813 848.37 7458.94 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
10. RPS23 ENSGALG00000015617 786.97 6919.10 ribosomal protein S23
11. GAPDH ENSGALG00000014442 755.34 6641.01 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
12. MT-ATP6 MT-ATP6 719.07 6322.12
13. RPLP1 ENSGALG00000030878 717.20 6305.68 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
14. SNRPD1 ENSGALG00000041334 634.41 5577.78 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
15. MT-ND5 MT-ND5 613.02 5389.72
16. RPL4 ENSGALG00000007711 610.23 5365.19 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
17. RPL13 ENSGALG00000006179 600.93 5283.42 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
18. PPIA ENSGALG00000028600 577.67 5078.92 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
19. RPS21 ENSGALG00000005338 563.72 4956.27 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
20. RPS15 ENSGALG00000015195 561.86 4939.92 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
21. RPSA 550.69 4841.71 ribosomal protein SA
22. RPL35 ENSGALG00000035677 545.11 4792.65 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
23. RPL29 ENSGALG00000026978 539.53 4743.59 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
24. RPS2 ENSGALG00000005490 478.14 4203.85 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
25. MDK ENSGALG00000008367 455.81 4007.52 midkine [Source:NCBI gene;Acc:423196]
26. RPL27A ENSGALG00000005948 452.09 3974.81 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
27. RPS11 ENSGALG00000017299 452.09 3974.81 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
28. MT-ND4 MT-ND4 440.93 3876.69
29. RPS12 ENSGALG00000013990 440.00 3868.52 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
30. RPS29 ENSGALG00000012229 434.42 3819.46 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
31. RPL12 ENSGALG00000008806 427.90 3762.13 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
32. RPL27 ENSGALG00000002837 424.18 3729.42 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
33. RPL19 ENSGALG00000001658 423.25 3721.25 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
34. RPS3A ENSGALG00000010077 422.32 3713.07 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
35. GNB2L1 ENSGALG00000000122 419.53 3688.54 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
36. gga-mir-3527 gga-mir-3527 418.60 3680.36
37. RPL7A ENSGALG00000003197 412.09 3623.13 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
38. RPS15A ENSGALG00000006771 410.23 3606.77 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
39. RPL36 ENSGALG00000000474 409.30 3598.60 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
40. RPS8 ENSGALG00000010124 400.93 3525.01 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
41. TXN ENSGALG00000015704 399.07 3508.66 thioredoxin [Source:NCBI gene;Acc:396437]
42. RPL38 ENSGALG00000001465 386.97 3402.27 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
43. RPS27A ENSGALG00000036790 378.60 3328.68 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
44. RPS4 RPS4 373.95 3287.80
45. ALDOC ENSGALG00000026077 367.44 3230.56 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
46. MT-CYB MT-CYB 365.58 3214.21
47. RPL37A ENSGALG00000011472 365.58 3214.21 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
48. RPL32 ENSGALG00000027142 363.72 3197.86 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
49. RPL37 ENSGALG00000014833 357.21 3140.62 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
50. RPL24 ENSGALG00000015339 346.04 3042.41 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
51. RPL6 ENSGALG00000004818 343.25 3017.88 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
52. RPL8 ENSGALG00000016232 342.32 3009.70 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
53. RPL18A 336.74 2960.64 ribosomal protein L18a
54. TCEB3 ENSGALG00000034625 336.74 2960.64 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
55. RPS6 ENSGALG00000015082 334.88 2944.29 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
56. RPL26 RPL26 332.09 2919.76
57. EIF5A2 ENSGALG00000009309 321.86 2829.82 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
58. RPS28 ENSGALG00000024398 313.49 2756.23 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
59. RPL23 ENSGALG00000001634 311.63 2739.88 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
60. ANP32B ENSGALG00000037483 309.77 2723.52 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
61. RPS16 ENSGALG00000026490 309.77 2723.52 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
62. LDHB ENSGALG00000035836 306.97 2698.90 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
63. RPL21 ENSGALG00000027035 306.97 2698.90 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
64. NME2 ENSGALG00000002932 301.39 2649.84 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
65. RPL7 ENSGALG00000035252 296.74 2608.96 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
66. MT-ND3 MT-ND3 287.44 2527.20
67. ENO1 ENSGALG00000002377 286.51 2519.02 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
68. ENSGALG00000028649 ENSGALG00000028649 272.56 2396.37
69. HMGN2 HMGN2 271.63 2388.19
70. RPL36AL ENSGALG00000004952 266.98 2347.31 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
71. ATP5G3 265.11 2330.87 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
72. PRDX1 ENSGALG00000010243 265.11 2330.87 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
73. RPS14 ENSGALG00000004588 265.11 2330.87 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
74. MT-CO1 MT-CO1 263.25 2314.52
75. RPL14 ENSGALG00000043379 255.81 2249.10 ribosomal protein L14
76. TMSB4X ENSGALG00000026383 254.88 2240.93 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
77. PHB2 ENSGALG00000014567 253.02 2224.57 prohibitin 2 [Source:NCBI gene;Acc:771124]
78. RPS13 ENSGALG00000006096 248.37 2183.69 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
79. H3-IX H3-IX 246.51 2167.34
80. RPS7 ENSGALG00000016392 244.65 2150.98 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
81. HMGN5 ENSGALG00000007131 243.72 2142.81 high mobility group nucleosome binding domain 5, transcript variant X1
82. FKBP4 ENSGALG00000014331 241.86 2126.45 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
83. RAN ENSGALG00000002569 240.93 2118.28 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
84. RPS25 ENSGALG00000007699 233.49 2052.86 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
85. RPL5 ENSGALG00000005922 227.91 2003.80 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
86. SET ENSGALG00000004701 226.98 1995.63 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
87. HNRNPDL ENSGALG00000023199 222.32 1954.66 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
88. PKM ENSGALG00000001992 220.46 1938.30 pyruvate kinase M1/2 [Source:NCBI gene;Acc:396456]
89. SLC25A6_1 ENSGALG00000016691 218.60 1921.95 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
90. RPL31 ENSGALG00000016775 216.74 1905.60 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
91. EIF4G2 ENSGALG00000005587 214.88 1889.24 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
92. MT-ND1 MT-ND1 213.95 1881.07
93. CRHOA CRHOA 210.23 1848.36
94. EEF1D 209.30 1840.18 eukaryotic translation elongation factor 1 delta, transcript variant X13
95. ENSGALG00000002696 ENSGALG00000002696 208.37 1832.01
96. SSR1 ENSGALG00000012798 208.37 1832.01 signal sequence receptor subunit 1 [Source:NCBI gene;Acc:420871]
97. RPLP2 ENSGALG00000034811 205.58 1807.48 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
98. RPS20 ENSGALG00000014432 205.58 1807.48 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
99. SEC61G ENSGALG00000037863 199.07 1750.24 Sec61 translocon gamma subunit [Source:NCBI gene;Acc:776639]
100. STMN1 ENSGALG00000001475 198.14 1742.06 stathmin 1 [Source:NCBI gene;Acc:396057]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA