Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_embryo, section s15.

Sample reads: 113,821. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4783.14 42023.82
2. EEF1A EEF1A 1324.49 11636.73
3. CIRBP ENSGALG00000030918 1180.97 10375.79 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
4. RPL35A ENSGALG00000007611, ENSGALG00000041230 1079.56 9484.82 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
5. RPS10 ENSGALG00000002813 1040.56 9142.18 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
6. RPL23A ENSGALG00000003966 915.76 8045.70 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
7. RPLP0 ENSGALG00000023294 904.83 7949.68 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
8. RPS23 ENSGALG00000015617 889.23 7812.62 ribosomal protein S23
9. gga-mir-3533 ENSGALG00000027736 843.99 7415.15 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
10. RPL15 ENSGALG00000011290 773.79 6798.38 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
11. RPLP1 ENSGALG00000030878 736.35 6469.44 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
12. MT-ATP6 MT-ATP6 725.43 6373.50
13. MT-ND5 MT-ND5 694.23 6099.38
14. RPS21 ENSGALG00000005338 692.67 6085.68 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
15. RPL35 ENSGALG00000035677 684.87 6017.15 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
16. RPL29 ENSGALG00000026978 642.74 5647.00 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
17. RPL13 ENSGALG00000006179 630.26 5537.35 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
18. RPS15 ENSGALG00000015195 628.70 5523.65 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
19. RPL4 ENSGALG00000007711 619.34 5441.41 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
20. SNRPD1 ENSGALG00000041334 591.26 5194.71 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
21. GAPDH ENSGALG00000014442 583.46 5126.18 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
22. RPL7A ENSGALG00000003197 569.42 5002.82 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
23. RPSA 569.42 5002.82 ribosomal protein SA
24. RPL27 ENSGALG00000002837 547.58 4810.94 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
25. RPS12 ENSGALG00000013990 541.34 4756.12 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
26. RPS11 ENSGALG00000017299 528.86 4646.47 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
27. RPL27A ENSGALG00000005948 522.62 4591.65 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
28. RPS29 ENSGALG00000012229 477.38 4194.18 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
29. PPIA ENSGALG00000028600 464.90 4084.53 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
30. RPS15A ENSGALG00000006771 461.78 4057.12 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
31. RPL36 ENSGALG00000000474 458.66 4029.71 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
32. RPS2 ENSGALG00000005490 458.66 4029.71 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
33. gga-mir-3527 gga-mir-3527 449.30 3947.47
34. MDK ENSGALG00000008367 444.62 3906.35 midkine [Source:NCBI gene;Acc:423196]
35. RPS4 RPS4 443.06 3892.65
36. RPL19 ENSGALG00000001658 441.50 3878.94 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
37. RPS27A ENSGALG00000036790 433.70 3810.41 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
38. RPS8 ENSGALG00000010124 433.70 3810.41 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
39. RPL37A ENSGALG00000011472 421.22 3700.76 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
40. RPL26 RPL26 419.66 3687.06
41. TXN ENSGALG00000015704 414.98 3645.94 thioredoxin [Source:NCBI gene;Acc:396437]
42. RPS6 ENSGALG00000015082 407.18 3577.41 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
43. RPS16 ENSGALG00000026490 404.06 3550.00 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
44. MT-ND4 MT-ND4 385.33 3385.44
45. RPL38 ENSGALG00000001465 382.21 3358.03 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
46. RPL12 ENSGALG00000008806 380.65 3344.32 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
47. RPL32 ENSGALG00000027142 379.09 3330.62 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
48. TCEB3 ENSGALG00000034625 377.53 3316.91 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
49. GNB2L1 ENSGALG00000000122 375.97 3303.21 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
50. RPL6 ENSGALG00000004818 371.29 3262.09 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
51. RPS28 ENSGALG00000024398 368.17 3234.68 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
52. LDHB ENSGALG00000035836 361.93 3179.85 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
53. RPS3A ENSGALG00000010077 360.37 3166.15 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
54. RPL8 ENSGALG00000016232 357.25 3138.73 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
55. NME2 ENSGALG00000002932 354.13 3111.32 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
56. RPL37 ENSGALG00000014833 352.57 3097.62 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
57. ATP5G3 346.33 3042.79 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
58. MT-CYB MT-CYB 344.77 3029.09
59. RPS14 ENSGALG00000004588 336.97 2960.56 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
60. RPL24 ENSGALG00000015339 332.29 2919.44 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
61. ENO1 ENSGALG00000002377 326.05 2864.62 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
62. RPL14 ENSGALG00000043379 321.37 2823.50 ribosomal protein L14
63. TMSB4X ENSGALG00000026383 315.13 2768.68 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
64. RPL23 ENSGALG00000001634 313.57 2754.97 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
65. RPL7 ENSGALG00000035252 308.89 2713.85 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
66. ALDOC ENSGALG00000026077 307.33 2700.15 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
67. ANP32B ENSGALG00000037483 302.65 2659.03 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
68. MT-ND3 MT-ND3 296.41 2604.21
69. RPS17 ENSGALG00000002157 296.41 2604.21 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
70. RPL18A 294.85 2590.50 ribosomal protein L18a
71. RPL21 ENSGALG00000027035 293.29 2576.79 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
72. RPL36AL ENSGALG00000004952 293.29 2576.79 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
73. EIF5A2 ENSGALG00000009309 288.61 2535.68 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
74. MT-CO1 MT-CO1 285.49 2508.26
75. RPS13 ENSGALG00000006096 276.13 2426.03 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
76. RPL5 ENSGALG00000005922 274.57 2412.32 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
77. RPS25 ENSGALG00000007699 273.01 2398.62 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
78. PRDX1 ENSGALG00000010243 269.89 2371.21 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
79. RPS7 ENSGALG00000016392 268.33 2357.50 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
80. PHB2 ENSGALG00000014567 255.85 2247.85 prohibitin 2 [Source:NCBI gene;Acc:771124]
81. SEC61G ENSGALG00000037863 255.85 2247.85 Sec61 translocon gamma subunit [Source:NCBI gene;Acc:776639]
82. SLC25A6_1 ENSGALG00000016691 255.85 2247.85 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
83. FKBP4 ENSGALG00000014331 249.61 2193.03 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
84. HMGN2 HMGN2 240.25 2110.79
85. RPS20 ENSGALG00000014432 237.13 2083.38 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
86. STMN1 ENSGALG00000001475 237.13 2083.38 stathmin 1 [Source:NCBI gene;Acc:396057]
87. H3-IX H3-IX 235.57 2069.68
88. RAN ENSGALG00000002569 235.57 2069.68 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
89. EIF4G2 ENSGALG00000005587 232.45 2042.26 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
90. RPLP2 ENSGALG00000034811 232.45 2042.26 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
91. HMGN5 ENSGALG00000007131 226.21 1987.44 high mobility group nucleosome binding domain 5, transcript variant X1
92. ENSGALG00000028649 ENSGALG00000028649 223.09 1960.03
93. HBZ ENSGALG00000023740 219.97 1932.62 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
94. EEF1D 218.41 1918.91 eukaryotic translation elongation factor 1 delta, transcript variant X13
95. ENSGALG00000002696 ENSGALG00000002696 218.41 1918.91
96. HBG1 HBG1 209.05 1836.68
97. RPL31 ENSGALG00000016775 198.13 1740.73 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
98. HSPA8 ENSGALG00000006512 196.57 1727.03 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
99. SET ENSGALG00000004701 188.77 1658.50 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
100. ZNF593 ENSGALG00000000542 188.77 1658.50 zinc finger protein 593 [Source:NCBI gene;Acc:419549]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA