Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_embryo, section s13.

Sample reads: 113,797. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4488.65 39446.20
2. CIRBP ENSGALG00000030918 1307.41 11489.50 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
3. EEF1A EEF1A 1080.25 9493.22
4. RPL35A ENSGALG00000007611, ENSGALG00000041230 1021.73 8978.95 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
5. MT-ND5 MT-ND5 975.10 8569.17
6. MT-ATP6 MT-ATP6 896.74 7880.54
7. RPS10 ENSGALG00000002813 866.98 7619.01 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
8. RPS23 ENSGALG00000015617 832.26 7313.89 ribosomal protein S23
9. RPL23A ENSGALG00000003966 800.52 7034.96 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
10. gga-mir-3533 ENSGALG00000027736 787.62 6921.60 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
11. RPL15 ENSGALG00000011290 746.95 6564.19 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
12. RPLP0 ENSGALG00000023294 736.04 6468.31 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
13. RPLP1 ENSGALG00000030878 712.23 6259.07 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
14. SNRPD1 ENSGALG00000041334 657.67 5779.60 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
15. RPS21 ENSGALG00000005338 649.74 5709.91 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
16. RPL4 ENSGALG00000007711 618.00 5430.98 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
17. GAPDH ENSGALG00000014442 575.34 5056.08 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
18. RPL29 ENSGALG00000026978 575.34 5056.08 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
19. RPL13 ENSGALG00000006179 554.51 4873.03 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
20. RPL35 ENSGALG00000035677 538.64 4733.56 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
21. RPS15 ENSGALG00000015195 537.65 4724.86 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
22. RPL27 ENSGALG00000002837 534.67 4698.67 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
23. RPL27A ENSGALG00000005948 519.79 4567.91 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
24. RPS29 ENSGALG00000012229 510.86 4489.43 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
25. gga-mir-3527 gga-mir-3527 495.98 4358.67
26. RPS8 ENSGALG00000010124 491.02 4315.08 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
27. RPS11 ENSGALG00000017299 477.14 4193.10 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
28. PPIA ENSGALG00000028600 470.19 4132.02 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
29. RPS15A ENSGALG00000006771 467.22 4105.92 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
30. RPL7A ENSGALG00000003197 452.34 3975.16 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
31. RPS2 ENSGALG00000005490 451.34 3966.37 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
32. RPL19 ENSGALG00000001658 442.42 3887.98 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
33. MT-ND4 MT-ND4 439.44 3861.79
34. RPL36 ENSGALG00000000474 435.47 3826.91 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
35. RPSA 430.51 3783.32 ribosomal protein SA
36. RPL38 ENSGALG00000001465 424.56 3731.03 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
37. RPL12 ENSGALG00000008806 422.58 3713.63 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
38. RPS4 RPS4 420.59 3696.14
39. RPL37A ENSGALG00000011472 418.61 3678.74 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
40. RPL8 ENSGALG00000016232 405.71 3565.37 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
41. MT-CYB MT-CYB 397.78 3495.69
42. MDK ENSGALG00000008367 395.79 3478.20 midkine [Source:NCBI gene;Acc:423196]
43. RPS6 ENSGALG00000015082 388.85 3417.21 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
44. RPS12 ENSGALG00000013990 381.91 3356.22 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
45. TXN ENSGALG00000015704 375.96 3303.93 thioredoxin [Source:NCBI gene;Acc:396437]
46. RPS3A ENSGALG00000010077 370.00 3251.56 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
47. RPL32 ENSGALG00000027142 365.04 3207.97 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
48. RPL23 ENSGALG00000001634 358.10 3146.98 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
49. RPL6 ENSGALG00000004818 348.18 3059.80 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
50. RPS27A ENSGALG00000036790 340.24 2990.03 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
51. RPL37 ENSGALG00000014833 335.28 2946.44 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
52. LDHB ENSGALG00000035836 330.32 2902.85 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
53. RPL26 RPL26 327.35 2876.75
54. RPL14 ENSGALG00000043379 317.43 2789.57 ribosomal protein L14
55. NME2 ENSGALG00000002932 314.45 2763.38 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
56. EIF5A2 ENSGALG00000009309 312.47 2745.98 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
57. TCEB3 ENSGALG00000034625 308.50 2711.09 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
58. ATP5G3 306.52 2693.69 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
59. ANP32B ENSGALG00000037483 305.53 2684.99 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
60. RPL24 ENSGALG00000015339 304.53 2676.21 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
61. ENO1 ENSGALG00000002377 301.56 2650.11 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
62. RPS16 ENSGALG00000026490 301.56 2650.11 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
63. RPL18A 298.58 2623.92 ribosomal protein L18a
64. MT-CO1 MT-CO1 289.65 2545.44
65. RPS28 ENSGALG00000024398 288.66 2536.74 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
66. RPS14 ENSGALG00000004588 286.68 2519.34 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
67. GNB2L1 ENSGALG00000000122 284.69 2501.85 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
68. ENSGALG00000028649 ENSGALG00000028649 281.72 2475.75
69. RPL36AL ENSGALG00000004952 280.73 2467.05 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
70. RPL7 ENSGALG00000035252 274.77 2414.68 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
71. SEC61G ENSGALG00000037863 273.78 2405.98 Sec61 translocon gamma subunit [Source:NCBI gene;Acc:776639]
72. RPL21 ENSGALG00000027035 264.86 2327.59 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
73. RPS7 ENSGALG00000016392 260.89 2292.70 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
74. RAN ENSGALG00000002569 257.91 2266.51 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
75. MT-ND3 MT-ND3 256.92 2257.81
76. EIF4G2 ENSGALG00000005587 254.94 2240.41 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
77. PRDX1 ENSGALG00000010243 254.94 2240.41 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
78. TMSB4X ENSGALG00000026383 253.94 2231.62 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
79. RPS13 ENSGALG00000006096 247.99 2179.33 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
80. RPS17 ENSGALG00000002157 240.06 2109.64 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
81. MT-ND1 MT-ND1 237.08 2083.46
82. H3-IX H3-IX 236.09 2074.76
83. RPL31 ENSGALG00000016775 235.10 2066.06 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
84. ENSGALG00000002696 ENSGALG00000002696 234.10 2057.27
85. RPS25 ENSGALG00000007699 233.11 2048.57 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
86. RPL5 ENSGALG00000005922 232.12 2039.87 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
87. HMGN5 ENSGALG00000007131 230.14 2022.47 high mobility group nucleosome binding domain 5, transcript variant X1
88. RPS20 ENSGALG00000014432 221.21 1943.99 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
89. PHB2 ENSGALG00000014567 217.24 1909.10 prohibitin 2 [Source:NCBI gene;Acc:771124]
90. RPLP2 ENSGALG00000034811 214.26 1882.91 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
91. SLC25A6_1 ENSGALG00000016691 214.26 1882.91 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
92. EEF1D 211.29 1856.81 eukaryotic translation elongation factor 1 delta, transcript variant X13
93. ENSGALG00000028992 ENSGALG00000028992 209.30 1839.33
94. FKBP4 ENSGALG00000014331 208.31 1830.63 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
95. SSR1 ENSGALG00000012798 208.31 1830.63 signal sequence receptor subunit 1 [Source:NCBI gene;Acc:420871]
96. HMGN2 HMGN2 206.33 1813.23
97. CRHOA CRHOA 199.39 1752.24
98. UBB ENSGALG00000004509 197.40 1734.75 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
99. HSPA8 ENSGALG00000006512 189.47 1665.06 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
100. SET ENSGALG00000004701 188.47 1656.27 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA