Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_embryo, section s12.

Sample reads: 113,783. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 2900.17 25489.89
2. CIRBP ENSGALG00000030918 1298.57 11413.26 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
3. EEF1A EEF1A 1286.91 11310.78
4. RPL35A ENSGALG00000007611, ENSGALG00000041230 1196.59 10516.95 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
5. RPLP1 ENSGALG00000030878 1096.55 9637.69 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
6. RPL23A ENSGALG00000003966 981.94 8630.37 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
7. RPS10 ENSGALG00000002813 971.26 8536.50 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
8. RPS23 ENSGALG00000015617 918.81 8075.51 ribosomal protein S23
9. RPS21 ENSGALG00000005338 825.57 7256.02 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
10. RPS15 ENSGALG00000015195 752.72 6615.73 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
11. RPL4 ENSGALG00000007711 733.30 6445.05 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
12. gga-mir-3533 ENSGALG00000027736 729.41 6410.86 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
13. RPL35 ENSGALG00000035677 727.47 6393.81 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
14. RPL13 ENSGALG00000006179 713.87 6274.28 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
15. MT-ND5 MT-ND5 686.68 6035.30
16. SNRPD1 ENSGALG00000041334 666.28 5856.00 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
17. RPS8 ENSGALG00000010124 619.66 5446.25 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
18. RPL27A ENSGALG00000005948 588.58 5173.09 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
19. RPL15 ENSGALG00000011290 570.13 5010.93 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
20. RPL27 ENSGALG00000002837 529.33 4652.33 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
21. RPL29 ENSGALG00000026978 520.59 4575.52 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
22. RPL7A ENSGALG00000003197 517.68 4549.94 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
23. RPS2 ENSGALG00000005490 511.85 4498.70 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
24. RPS15A ENSGALG00000006771 500.20 4396.31 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
25. RPL36 ENSGALG00000000474 497.28 4370.64 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
26. GAPDH ENSGALG00000014442 489.51 4302.35 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
27. RPSA 489.51 4302.35 ribosomal protein SA
28. gga-mir-3527 gga-mir-3527 475.92 4182.91
29. RPL37A ENSGALG00000011472 466.20 4097.48 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
30. MT-ATP6 MT-ATP6 459.40 4037.71
31. RPL19 ENSGALG00000001658 450.66 3960.90 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
32. RPL32 ENSGALG00000027142 448.72 3943.85 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
33. RPS16 ENSGALG00000026490 432.21 3798.74 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
34. MT-ND4 MT-ND4 428.32 3764.55
35. RPLP0 ENSGALG00000023294 425.41 3738.97 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
36. RPS3A ENSGALG00000010077 416.67 3662.15 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
37. RPS11 ENSGALG00000017299 413.76 3636.58 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
38. RPL38 ENSGALG00000001465 406.96 3576.81 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
39. RPL12 ENSGALG00000008806 402.10 3534.10 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
40. RPS29 ENSGALG00000012229 399.19 3508.52 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
41. TXN ENSGALG00000015704 390.45 3431.70 thioredoxin [Source:NCBI gene;Acc:396437]
42. RPS4 RPS4 376.85 3312.17
43. RPL8 ENSGALG00000016232 375.88 3303.65 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
44. RPS27A ENSGALG00000036790 375.88 3303.65 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
45. NME2 ENSGALG00000002932 357.42 3141.40 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
46. TCEB3 ENSGALG00000034625 357.42 3141.40 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
47. RPS12 ENSGALG00000013990 352.57 3098.77 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
48. RPS17 ENSGALG00000002157 352.57 3098.77 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
49. MT-CYB MT-CYB 350.62 3081.63
50. EIF5A2 ENSGALG00000009309 347.71 3056.06 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
51. GNB2L1 ENSGALG00000000122 346.74 3047.53 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
52. RPL37 ENSGALG00000014833 346.74 3047.53 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
53. RPL14 ENSGALG00000043379 345.77 3039.01 ribosomal protein L14
54. RPL24 ENSGALG00000015339 345.77 3039.01 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
55. RPL21 ENSGALG00000027035 343.82 3021.87 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
56. RPL23 ENSGALG00000001634 342.85 3013.34 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
57. RPL7 ENSGALG00000035252 339.94 2987.77 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
58. TMSB4X ENSGALG00000026383 338.97 2979.24 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
59. RPL36AL ENSGALG00000004952 336.05 2953.58 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
60. RPL18A 335.08 2945.05 ribosomal protein L18a
61. PPIA ENSGALG00000028600 327.31 2876.76 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
62. RPS14 ENSGALG00000004588 321.49 2825.61 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
63. ATP5G3 319.54 2808.47 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
64. ENO1 ENSGALG00000002377 319.54 2808.47 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
65. RPL6 ENSGALG00000004818 317.60 2791.42 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
66. LDHB ENSGALG00000035836 316.63 2782.89 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
67. HBG1 HBG1 308.86 2714.60
68. RPL26 RPL26 295.26 2595.07
69. RPS13 ENSGALG00000006096 281.66 2475.54 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
70. RPS7 ENSGALG00000016392 276.81 2432.91 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
71. EIF4G2 ENSGALG00000005587 272.92 2398.72 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
72. RPS25 ENSGALG00000007699 268.07 2356.09 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
73. ALDOC ENSGALG00000026077 264.18 2321.90 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
74. HBZ ENSGALG00000023740 264.18 2321.90 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
75. PRDX1 ENSGALG00000010243 264.18 2321.90 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
76. ANP32B ENSGALG00000037483 263.21 2313.38 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
77. MDK ENSGALG00000008367 262.24 2304.85 midkine [Source:NCBI gene;Acc:423196]
78. MT-ND3 MT-ND3 261.27 2296.33
79. RPL5 ENSGALG00000005922 256.41 2253.61 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
80. RAN ENSGALG00000002569 254.47 2236.56 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
81. RPL31 ENSGALG00000016775 254.47 2236.56 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
82. STMN1 ENSGALG00000001475 252.53 2219.51 stathmin 1 [Source:NCBI gene;Acc:396057]
83. FKBP4 ENSGALG00000014331 248.64 2185.32 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
84. RPS6 ENSGALG00000015082 235.04 2065.79 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
85. CRHOA CRHOA 233.10 2048.74
86. HNRNPDL ENSGALG00000023199 227.27 1997.50 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
87. SET ENSGALG00000004701 226.30 1988.97 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
88. ENSGALG00000002696 ENSGALG00000002696 219.50 1929.21
89. SLC25A6_1 ENSGALG00000016691 217.56 1912.16 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
90. SSR1 ENSGALG00000012798 217.56 1912.16 signal sequence receptor subunit 1 [Source:NCBI gene;Acc:420871]
91. MT-CO1 MT-CO1 214.65 1886.58
92. CCT4 ENSGALG00000008812 211.73 1860.92 chaperonin containing TCP1 subunit 4 [Source:NCBI gene;Acc:395414]
93. EEF1D 211.73 1860.92 eukaryotic translation elongation factor 1 delta, transcript variant X13
94. ENSGALG00000028649 ENSGALG00000028649 206.88 1818.29
95. HBE 204.94 1801.24 hemoglobin subunit epsilon
96. HMGN2 HMGN2 203.96 1792.63
97. H3-IX H3-IX 202.02 1775.57
98. UBB ENSGALG00000004509 198.14 1741.47 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
99. HSPA8 ENSGALG00000006512 191.34 1681.71 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
100. SEC61G ENSGALG00000037863 186.48 1638.99 Sec61 translocon gamma subunit [Source:NCBI gene;Acc:776639]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA