Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_embryo, section s11.

Sample reads: 113,792. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3508.28 30831.99
2. CIRBP ENSGALG00000030918 1177.31 10346.61 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
3. EEF1A EEF1A 1080.55 9496.25
4. RPL35A ENSGALG00000007611, ENSGALG00000041230 1003.13 8815.86 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
5. RPS10 ENSGALG00000002813 956.90 8409.57 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
6. RPLP0 ENSGALG00000023294 906.37 7965.50 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
7. gga-mir-3533 ENSGALG00000027736 889.17 7814.34 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
8. RPL23A ENSGALG00000003966 852.61 7493.03 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
9. MT-ND5 MT-ND5 794.55 6982.78
10. RPS23 ENSGALG00000015617 787.02 6916.61 ribosomal protein S23
11. RPL15 ENSGALG00000011290 776.27 6822.13 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
12. RPL13 ENSGALG00000006179 765.52 6727.66 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
13. SNRPD1 ENSGALG00000041334 763.37 6708.76 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
14. GAPDH ENSGALG00000014442 698.86 6141.83 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
15. MT-ATP6 MT-ATP6 688.11 6047.35
16. RPL35 ENSGALG00000035677 681.66 5990.67 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
17. RPL4 ENSGALG00000007711 651.55 5726.05 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
18. RPS15 ENSGALG00000015195 642.95 5650.47 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
19. RPLP1 ENSGALG00000030878 618.22 5433.13 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
20. RPL27A ENSGALG00000005948 559.09 4913.48 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
21. RPS21 ENSGALG00000005338 556.94 4894.58 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
22. RPS12 ENSGALG00000013990 524.68 4611.07 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
23. RPL29 ENSGALG00000026978 512.86 4507.19 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
24. PPIA ENSGALG00000028600 509.63 4478.81 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
25. RPS15A ENSGALG00000006771 479.53 4214.28 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
26. RPSA 464.47 4081.92 ribosomal protein SA
27. RPS2 ENSGALG00000005490 463.40 4072.52 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
28. MDK ENSGALG00000008367 448.35 3940.26 midkine [Source:NCBI gene;Acc:423196]
29. RPL7A ENSGALG00000003197 442.97 3892.98 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
30. RPS3A ENSGALG00000010077 440.82 3874.08 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
31. RPS29 ENSGALG00000012229 434.37 3817.40 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
32. RPL19 ENSGALG00000001658 433.29 3807.90 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
33. RPL27 ENSGALG00000002837 419.32 3685.13 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
34. RPL32 ENSGALG00000027142 402.11 3533.88 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
35. RPL36 ENSGALG00000000474 401.04 3524.48 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
36. gga-mir-3527 gga-mir-3527 401.04 3524.48
37. RPS8 ENSGALG00000010124 398.89 3505.58 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
38. MT-ND4 MT-ND4 397.81 3496.09
39. MT-CYB MT-CYB 394.59 3467.79
40. RPL12 ENSGALG00000008806 390.29 3430.00 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
41. EIF5A2 ENSGALG00000009309 389.21 3420.51 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
42. RPL24 ENSGALG00000015339 383.84 3373.32 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
43. RPS27A ENSGALG00000036790 374.16 3288.25 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
44. GNB2L1 ENSGALG00000000122 372.01 3269.35 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
45. RPL38 ENSGALG00000001465 368.78 3240.97 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
46. TXN ENSGALG00000015704 367.71 3231.56 thioredoxin [Source:NCBI gene;Acc:396437]
47. RPL8 ENSGALG00000016232 364.48 3203.18 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
48. TMSB4X ENSGALG00000026383 355.88 3127.60 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
49. ANP32B ENSGALG00000037483 350.51 3080.40 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
50. RPL26 RPL26 349.43 3070.91
51. RPL21 ENSGALG00000027035 341.90 3004.74 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
52. RPL6 ENSGALG00000004818 339.75 2985.84 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
53. RPS16 ENSGALG00000026490 337.60 2966.95 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
54. HMGN5 ENSGALG00000007131 329.00 2891.37 high mobility group nucleosome binding domain 5, transcript variant X1
55. LDHB ENSGALG00000035836 321.48 2825.28 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
56. RPS11 ENSGALG00000017299 320.40 2815.79 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
57. TCEB3 ENSGALG00000034625 318.25 2796.89 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
58. RPL37A ENSGALG00000011472 315.02 2768.51 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
59. RPS28 ENSGALG00000024398 313.95 2759.10 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
60. RPS4 RPS4 307.50 2702.42
61. ALDOC ENSGALG00000026077 305.35 2683.52 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
62. RPL37 ENSGALG00000014833 302.12 2655.14 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
63. RPL23 ENSGALG00000001634 289.22 2541.77 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
64. ATP5G3 279.54 2456.70 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
65. RPS14 ENSGALG00000004588 277.39 2437.80 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
66. RAN ENSGALG00000002569 276.32 2428.40 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
67. RPL14 ENSGALG00000043379 274.17 2409.50 ribosomal protein L14
68. NME2 ENSGALG00000002932 266.64 2343.33 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
69. RPL7 ENSGALG00000035252 265.57 2333.92 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
70. MT-CO1 MT-CO1 264.49 2324.43
71. RPL18A 261.27 2296.13 ribosomal protein L18a
72. PRDX1 ENSGALG00000010243 259.12 2277.24 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
73. HMGN2 HMGN2 256.97 2258.34
74. ENO1 ENSGALG00000002377 255.89 2248.85 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
75. ENSGALG00000028649 ENSGALG00000028649 255.89 2248.85
76. RPS13 ENSGALG00000006096 253.74 2229.96 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
77. RPS17 ENSGALG00000002157 253.74 2229.96 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
78. RPS6 ENSGALG00000015082 248.36 2182.67 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
79. PHB2 ENSGALG00000014567 246.21 2163.78 prohibitin 2 [Source:NCBI gene;Acc:771124]
80. RPL5 ENSGALG00000005922 245.14 2154.38 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
81. STMN1 ENSGALG00000001475 244.06 2144.88 stathmin 1 [Source:NCBI gene;Acc:396057]
82. RPL36AL ENSGALG00000004952 241.91 2125.99 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
83. HNRNPDL ENSGALG00000023199 236.54 2078.80 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
84. H3-IX H3-IX 231.16 2031.51
85. MT-ND3 MT-ND3 229.01 2012.62
86. RPLP2 ENSGALG00000034811 222.56 1955.94 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
87. SEC61G ENSGALG00000037863 216.11 1899.25 Sec61 translocon gamma subunit [Source:NCBI gene;Acc:776639]
88. HBG1 HBG1 213.96 1880.36
89. SLC25A6_1 ENSGALG00000016691 213.96 1880.36 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
90. HBZ ENSGALG00000023740 212.88 1870.86 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
91. RPL31 ENSGALG00000016775 212.88 1870.86 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
92. SET ENSGALG00000004701 208.58 1833.07 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
93. RPS20 ENSGALG00000014432 206.43 1814.18 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
94. CCT4 ENSGALG00000008812 203.21 1785.88 chaperonin containing TCP1 subunit 4 [Source:NCBI gene;Acc:395414]
95. EIF4G2 ENSGALG00000005587 201.06 1766.99 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
96. TCP1 ENSGALG00000011637 201.06 1766.99 t-complex 1 [Source:NCBI gene;Acc:421586]
97. ENSGALG00000002696 ENSGALG00000002696 199.98 1757.49
98. EEF1D 198.91 1748.09 eukaryotic translation elongation factor 1 delta, transcript variant X13
99. MT-ND1 MT-ND1 195.68 1719.70
100. SFPQ ENSGALG00000002514 191.38 1681.91 splicing factor proline and glutamine rich [Source:HGNC Symbol;Acc:HGNC:10774]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA