Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_aorta, section s86.

Sample reads: 235,499. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 6261.00 26588.58
2. RPLP0 ENSGALG00000023294 2824.00 11992.68 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
3. RPS29 ENSGALG00000012229 2452.00 10412.91 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
4. EEF1A EEF1A 2423.00 10289.75
5. GAPDH ENSGALG00000014442 2390.00 10149.61 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
6. RPS10 ENSGALG00000002813 2350.00 9979.74 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
7. RPS15 ENSGALG00000015195 2270.00 9640.01 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
8. RPL35A ENSGALG00000007611, ENSGALG00000041230 2182.00 9266.30 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
9. gga-mir-3527 gga-mir-3527 2149.00 9126.16
10. gga-mir-3533 ENSGALG00000027736 2048.00 8697.24 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
11. RPL13 ENSGALG00000006179 1879.00 7979.55 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
12. PPIA ENSGALG00000028600 1776.00 7542.14 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
13. RPL4 ENSGALG00000007711 1750.00 7431.72 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
14. RPL15 ENSGALG00000011290 1697.00 7206.65 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
15. MT-ATP6 MT-ATP6 1687.00 7164.18
16. RPS2 ENSGALG00000005490 1620.00 6879.65 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
17. RPS4 RPS4 1580.00 6709.78
18. HBZ ENSGALG00000023740 1560.00 6624.85 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
19. RPSA 1516.00 6438.00 ribosomal protein SA
20. RPL23A ENSGALG00000003966 1490.00 6327.58 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
21. RPS28 ENSGALG00000024398 1441.00 6119.49 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
22. HBG1 HBG1 1402.00 5953.87
23. RPLP1 ENSGALG00000030878 1381.00 5864.69 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
24. RPS8 ENSGALG00000010124 1381.00 5864.69 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
25. RPL35 ENSGALG00000035677 1380.00 5860.44 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
26. RPL19 ENSGALG00000001658 1284.00 5452.76 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
27. RPS14 ENSGALG00000004588 1278.00 5427.28 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
28. RPS11 ENSGALG00000017299 1272.00 5401.80 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
29. RPS21 ENSGALG00000005338 1259.00 5346.59 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
30. MT-ND3 MT-ND3 1255.00 5329.61
31. RPL6 ENSGALG00000004818 1231.00 5227.69 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
32. RPL29 ENSGALG00000026978 1191.00 5057.82 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
33. RPL24 ENSGALG00000015339 1177.00 4998.37 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
34. RPS15A ENSGALG00000006771 1176.00 4994.12 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
35. RPL38 ENSGALG00000001465 1158.00 4917.68 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
36. RPL27A ENSGALG00000005948 1152.00 4892.20 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
37. MT-ND5 MT-ND5 1145.00 4862.47
38. MT-ND1 MT-ND1 1101.00 4675.62
39. RPL36 ENSGALG00000000474 1099.00 4667.12 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
40. RPL7A ENSGALG00000003197 1098.00 4662.88 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
41. RPL12 ENSGALG00000008806 1095.00 4650.14 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
42. RPL18A 1077.00 4573.70 ribosomal protein L18a
43. RPL27 ENSGALG00000002837 1038.00 4408.07 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
44. RPL32 ENSGALG00000027142 1027.00 4361.36 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
45. GNB2L1 ENSGALG00000000122 992.00 4212.73 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
46. RPL8 ENSGALG00000016232 939.00 3987.65 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
47. MT-ND4 MT-ND4 935.00 3970.66
48. SNRPD1 ENSGALG00000041334 933.00 3962.17 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
49. NME2 ENSGALG00000002932 924.00 3923.95 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
50. RPS23 ENSGALG00000015617 923.00 3919.70 ribosomal protein S23
51. RPL37A ENSGALG00000011472 921.00 3911.21 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
52. RPL26 RPL26 916.00 3889.98
53. RPS16 ENSGALG00000026490 897.00 3809.29 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
54. MT-ND6 MT-ND6 892.00 3788.06
55. HBE 883.00 3749.84 hemoglobin subunit epsilon
56. RPS7 ENSGALG00000016392 866.00 3677.64 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
57. RPS12 ENSGALG00000013990 854.00 3626.68 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
58. RPS27A ENSGALG00000036790 853.00 3622.43 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
59. RPL36AL ENSGALG00000004952 783.00 3325.17 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
60. RPL7 ENSGALG00000035252 783.00 3325.17 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
61. RPL14 ENSGALG00000043379 770.00 3269.96 ribosomal protein L14
62. TCEB3 ENSGALG00000034625 761.00 3231.74 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
63. CIRBP ENSGALG00000030918 719.00 3053.38 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
64. RPL5 ENSGALG00000005922 706.00 2998.17 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
65. TMSB4X ENSGALG00000026383 706.00 2998.17 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
66. RPS17 ENSGALG00000002157 691.00 2934.47 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
67. RPS25 ENSGALG00000007699 690.00 2930.22 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
68. RPS13 ENSGALG00000006096 682.00 2896.25 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
69. RPL21 ENSGALG00000027035 674.00 2862.28 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
70. MT-CYB MT-CYB 669.00 2841.04
71. MDK ENSGALG00000008367 663.00 2815.56 midkine [Source:NCBI gene;Acc:423196]
72. RPS3A ENSGALG00000010077 663.00 2815.56 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
73. UBB ENSGALG00000004509 619.00 2628.71 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
74. RPS6 ENSGALG00000015082 618.00 2624.46 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
75. ANP32B ENSGALG00000037483 615.00 2611.72 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
76. RPS20 ENSGALG00000014432 613.00 2603.23 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
77. RPL10A ENSGALG00000002644 604.00 2565.01 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
78. STMN1 ENSGALG00000001475 593.00 2518.29 stathmin 1 [Source:NCBI gene;Acc:396057]
79. EEF1D 588.00 2497.06 eukaryotic translation elongation factor 1 delta, transcript variant X13
80. RPS3 ENSGALG00000017330 582.00 2471.58 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
81. PRDX1 ENSGALG00000010243 580.00 2463.09 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
82. RPS24 ENSGALG00000004871 580.00 2463.09 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
83. MT-CO1 MT-CO1 578.00 2454.59
84. ENO1 ENSGALG00000002377 560.00 2378.15 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
85. ENSGALG00000028992 ENSGALG00000028992 553.00 2348.42
86. RPL23 ENSGALG00000001634 539.00 2288.97 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
87. HMGN2 HMGN2 519.00 2204.04
88. ATP5G3 472.00 2004.44 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
89. RPL37 ENSGALG00000014833 469.00 1991.70 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
90. FTH FTH 458.00 1944.99
91. CRHOA CRHOA 455.00 1932.25
92. EIF5A2 ENSGALG00000009309 439.00 1864.30 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
93. LDHB ENSGALG00000035836 421.00 1787.86 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
94. SLC25A6_1 ENSGALG00000016691 402.00 1707.17 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
95. ENSGALG00000022570 ENSGALG00000022570 399.00 1694.43
96. PKM ENSGALG00000001992 388.00 1647.72 pyruvate kinase M1/2 [Source:NCBI gene;Acc:396456]
97. ZNF593 ENSGALG00000000542 388.00 1647.72 zinc finger protein 593 [Source:NCBI gene;Acc:419549]
98. ENSGALG00000028649 ENSGALG00000028649 385.00 1634.98
99. RPL31 ENSGALG00000016775 380.00 1613.75 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
100. ATP5L ENSGALG00000006899 378.00 1605.25 ATP synthase, H+ transporting, mitochondrial Fo complex subunit G
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA