Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_aorta, section s85.

Sample reads: 235,394. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4958.00 21063.90
2. RPLP0 ENSGALG00000023294 3507.00 14899.38 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
3. HBZ ENSGALG00000023740 2891.00 12282.32 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
4. gga-mir-3533 ENSGALG00000027736 2798.00 11887.21 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
5. RPS29 ENSGALG00000012229 2775.00 11789.50 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
6. RPS10 ENSGALG00000002813 2759.00 11721.52 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
7. RPS15 ENSGALG00000015195 2465.00 10472.47 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
8. HBG1 HBG1 2390.00 10153.84
9. GAPDH ENSGALG00000014442 2185.00 9282.90 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
10. gga-mir-3527 gga-mir-3527 2055.00 8730.60
11. EEF1A EEF1A 2016.00 8564.91
12. RPL35A ENSGALG00000007611, ENSGALG00000041230 1987.00 8441.70 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
13. HBE 1933.00 8212.29 hemoglobin subunit epsilon
14. PPIA ENSGALG00000028600 1854.00 7876.66 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
15. RPL4 ENSGALG00000007711 1853.00 7872.41 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
16. RPSA 1822.00 7740.71 ribosomal protein SA
17. RPL23A ENSGALG00000003966 1767.00 7507.04 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
18. RPS2 ENSGALG00000005490 1718.00 7298.87 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
19. RPL13 ENSGALG00000006179 1690.00 7179.91 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
20. RPS4 RPS4 1644.00 6984.48
21. RPL15 ENSGALG00000011290 1632.00 6933.50 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
22. RPS8 ENSGALG00000010124 1551.00 6589.37 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
23. MT-ATP6 MT-ATP6 1531.00 6504.40
24. RPS21 ENSGALG00000005338 1488.00 6321.72 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
25. MT-ND3 MT-ND3 1441.00 6122.04
26. RPS28 ENSGALG00000024398 1408.00 5981.84 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
27. RPLP1 ENSGALG00000030878 1402.00 5956.35 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
28. RPL19 ENSGALG00000001658 1344.00 5709.94 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
29. RPL24 ENSGALG00000015339 1332.00 5658.96 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
30. RPS14 ENSGALG00000004588 1323.00 5620.72 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
31. RPL35 ENSGALG00000035677 1271.00 5399.80 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
32. RPL18A 1233.00 5238.36 ribosomal protein L18a
33. RPL7A ENSGALG00000003197 1225.00 5204.37 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
34. RPL36 ENSGALG00000000474 1191.00 5059.92 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
35. RPL29 ENSGALG00000026978 1171.00 4974.96 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
36. MT-ND1 MT-ND1 1150.00 4885.74
37. RPS15A ENSGALG00000006771 1139.00 4839.00 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
38. RPL32 ENSGALG00000027142 1133.00 4813.51 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
39. RPL27A ENSGALG00000005948 1123.00 4771.03 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
40. RPS11 ENSGALG00000017299 1110.00 4715.80 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
41. MT-ND5 MT-ND5 1080.00 4588.34
42. RPL12 ENSGALG00000008806 1025.00 4354.68 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
43. RPL38 ENSGALG00000001465 1023.00 4346.18 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
44. GNB2L1 ENSGALG00000000122 996.00 4231.47 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
45. MT-ND4 MT-ND4 946.00 4019.05
46. RPL6 ENSGALG00000004818 943.00 4006.30 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
47. RPS23 ENSGALG00000015617 928.00 3942.58 ribosomal protein S23
48. RPS16 ENSGALG00000026490 926.00 3934.08 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
49. MDK ENSGALG00000008367 918.00 3900.09 midkine [Source:NCBI gene;Acc:423196]
50. RPL27 ENSGALG00000002837 917.00 3895.84 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
51. RPL14 ENSGALG00000043379 915.00 3887.35 ribosomal protein L14
52. TMSB4X ENSGALG00000026383 892.00 3789.63 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
53. RPL26 RPL26 891.00 3785.38
54. RPL8 ENSGALG00000016232 882.00 3747.15 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
55. RPS12 ENSGALG00000013990 879.00 3734.40 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
56. SNRPD1 ENSGALG00000041334 863.00 3666.43 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
57. RPS7 ENSGALG00000016392 847.00 3598.45 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
58. NME2 ENSGALG00000002932 842.00 3577.21 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
59. RPS27A ENSGALG00000036790 838.00 3560.22 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
60. MT-ND6 MT-ND6 823.00 3496.49
61. RPL7 ENSGALG00000035252 814.00 3458.25 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
62. RPS17 ENSGALG00000002157 786.00 3339.30 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
63. RPL36AL ENSGALG00000004952 764.00 3245.83 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
64. RPS3A ENSGALG00000010077 738.00 3135.37 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
65. RPL21 ENSGALG00000027035 737.00 3131.12 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
66. ANP32B ENSGALG00000037483 730.00 3101.38 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
67. RPL5 ENSGALG00000005922 730.00 3101.38 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
68. RPL37A ENSGALG00000011472 716.00 3041.90 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
69. RPS25 ENSGALG00000007699 694.00 2948.44 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
70. MT-CYB MT-CYB 690.00 2931.44
71. TCEB3 ENSGALG00000034625 669.00 2842.22 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
72. CIRBP ENSGALG00000030918 668.00 2837.98 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
73. RPS24 ENSGALG00000004871 664.00 2820.98 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
74. RPS13 ENSGALG00000006096 659.00 2799.74 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
75. RPS3 ENSGALG00000017330 645.00 2740.26 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
76. RPL10A ENSGALG00000002644 636.00 2702.03 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
77. RPL23 ENSGALG00000001634 623.00 2646.80 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
78. PRDX1 ENSGALG00000010243 619.00 2629.80 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
79. UBB ENSGALG00000004509 606.00 2574.57 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
80. EEF1D 591.00 2510.84 eukaryotic translation elongation factor 1 delta, transcript variant X13
81. ALDOC ENSGALG00000026077 569.00 2417.38 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
82. STMN1 ENSGALG00000001475 565.00 2400.38 stathmin 1 [Source:NCBI gene;Acc:396057]
83. FTH FTH 561.00 2383.39
84. RPS20 ENSGALG00000014432 555.00 2357.90 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
85. RPL37 ENSGALG00000014833 539.00 2289.92 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
86. ENSGALG00000028992 ENSGALG00000028992 537.00 2281.43
87. RPS6 ENSGALG00000015082 532.00 2260.18 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
88. MT-CO1 MT-CO1 520.00 2209.20
89. ENO1 ENSGALG00000002377 516.00 2192.21 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
90. ATP5G3 453.00 1924.56 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
91. HMGN2 HMGN2 437.00 1856.58
92. EIF5A2 ENSGALG00000009309 435.00 1848.08 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
93. ENSGALG00000028649 ENSGALG00000028649 429.00 1822.59
94. ENSGALG00000018384 ENSGALG00000018384 422.00 1792.85
95. RPL31 ENSGALG00000016775 416.00 1767.36 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
96. FKBP12 FKBP12 412.00 1750.37
97. ENSGALG00000022570 ENSGALG00000022570 409.00 1737.62
98. LDHB ENSGALG00000035836 403.00 1712.13 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
99. ZNF593 ENSGALG00000000542 401.00 1703.64 zinc finger protein 593 [Source:NCBI gene;Acc:419549]
100. CRHOA CRHOA 395.00 1678.14
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA