Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_aorta, section s82.

Sample reads: 236,262. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. HBZ ENSGALG00000023740 8254.00 34937.42 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
2. HBG1 HBG1 6471.00 27390.36
3. MT-CO3 MT-CO3 5180.00 21925.83
4. HBE 3954.00 16736.44 hemoglobin subunit epsilon
5. RPLP0 ENSGALG00000023294 3238.00 13705.76 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
6. RPS29 ENSGALG00000012229 2576.00 10903.66 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
7. RPS15 ENSGALG00000015195 2310.00 9777.74 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
8. RPS10 ENSGALG00000002813 2308.00 9769.27 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
9. RPL35A ENSGALG00000007611, ENSGALG00000041230 2255.00 9544.93 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
10. EEF1A EEF1A 2246.00 9506.84
11. gga-mir-3533 ENSGALG00000027736 2171.00 9189.38 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
12. GAPDH ENSGALG00000014442 2090.00 8846.52 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
13. RPS28 ENSGALG00000024398 1905.00 8063.46 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
14. RPL4 ENSGALG00000007711 1751.00 7411.61 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
15. RPS2 ENSGALG00000005490 1697.00 7183.04 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
16. RPS21 ENSGALG00000005338 1677.00 7098.38 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
17. RPL23A ENSGALG00000003966 1651.00 6988.33 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
18. RPL15 ENSGALG00000011290 1591.00 6734.36 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
19. PPIA ENSGALG00000028600 1559.00 6598.91 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
20. RPS8 ENSGALG00000010124 1557.00 6590.45 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
21. RPL13 ENSGALG00000006179 1536.00 6501.56 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
22. RPL29 ENSGALG00000026978 1468.00 6213.73 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
23. gga-mir-3527 gga-mir-3527 1466.00 6205.26
24. RPS4 RPS4 1452.00 6146.01
25. RPSA 1353.00 5726.96 ribosomal protein SA
26. RPL27A ENSGALG00000005948 1346.00 5697.33 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
27. RPS14 ENSGALG00000004588 1344.00 5688.86 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
28. RPL38 ENSGALG00000001465 1306.00 5528.02 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
29. RPLP1 ENSGALG00000030878 1281.00 5422.20 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
30. RPL24 ENSGALG00000015339 1279.00 5413.73 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
31. MT-ATP6 MT-ATP6 1269.00 5371.41
32. RPL19 ENSGALG00000001658 1263.00 5346.01 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
33. RPL35 ENSGALG00000035677 1254.00 5307.91 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
34. RPS15A ENSGALG00000006771 1235.00 5227.49 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
35. RPL32 ENSGALG00000027142 1203.00 5092.04 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
36. RPS11 ENSGALG00000017299 1159.00 4905.80 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
37. RPL7A ENSGALG00000003197 1156.00 4893.10 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
38. RPL26 RPL26 1142.00 4833.84
39. RPL27 ENSGALG00000002837 1129.00 4778.82 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
40. RPL18A 1103.00 4668.76 ribosomal protein L18a
41. RPL36 ENSGALG00000000474 1094.00 4630.67 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
42. MT-ND3 MT-ND3 1061.00 4490.99
43. RPS12 ENSGALG00000013990 1038.00 4393.63 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
44. GNB2L1 ENSGALG00000000122 1034.00 4376.70 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
45. MDK ENSGALG00000008367 1022.00 4325.91 midkine [Source:NCBI gene;Acc:423196]
46. RPL12 ENSGALG00000008806 997.00 4220.09 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
47. RPS16 ENSGALG00000026490 990.00 4190.46 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
48. RPS27A ENSGALG00000036790 973.00 4118.50 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
49. MT-ND1 MT-ND1 967.00 4093.10
50. RPL6 ENSGALG00000004818 967.00 4093.10 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
51. MT-ND5 MT-ND5 966.00 4088.87
52. RPS7 ENSGALG00000016392 946.00 4004.22 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
53. RPL8 ENSGALG00000016232 932.00 3944.96 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
54. MT-ND6 MT-ND6 925.00 3915.33
55. RPL14 ENSGALG00000043379 911.00 3856.07 ribosomal protein L14
56. RPS23 ENSGALG00000015617 900.00 3809.51 ribosomal protein S23
57. NME2 ENSGALG00000002932 823.00 3483.58 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
58. RPL37A ENSGALG00000011472 821.00 3475.12 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
59. RPS25 ENSGALG00000007699 798.00 3377.76 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
60. MT-ND4 MT-ND4 789.00 3339.67
61. SNRPD1 ENSGALG00000041334 763.00 3229.62 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
62. RPL21 ENSGALG00000027035 756.00 3199.99 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
63. RPL7 ENSGALG00000035252 742.00 3140.73 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
64. RPS17 ENSGALG00000002157 738.00 3123.80 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
65. RPL36AL ENSGALG00000004952 736.00 3115.33 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
66. RPL10A ENSGALG00000002644 722.00 3056.07 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
67. RPS3 ENSGALG00000017330 714.00 3022.21 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
68. ENSGALG00000028992 ENSGALG00000028992 705.00 2984.11
69. FTH FTH 698.00 2954.48
70. TCEB3 ENSGALG00000034625 691.00 2924.86 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
71. TMSB4X ENSGALG00000026383 661.00 2797.87 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
72. RPL5 ENSGALG00000005922 654.00 2768.24 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
73. RPS3A ENSGALG00000010077 645.00 2730.15 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
74. RPS13 ENSGALG00000006096 618.00 2615.86 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
75. RPL37 ENSGALG00000014833 615.00 2603.16 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
76. RPS20 ENSGALG00000014432 608.00 2573.53 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
77. UBB ENSGALG00000004509 606.00 2565.07 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
78. MT-CYB MT-CYB 597.00 2526.97
79. STMN1 ENSGALG00000001475 581.00 2459.25 stathmin 1 [Source:NCBI gene;Acc:396057]
80. PRDX1 ENSGALG00000010243 573.00 2425.39 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
81. RPS6 ENSGALG00000015082 573.00 2425.39 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
82. ANP32B ENSGALG00000037483 553.00 2340.73 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
83. EEF1D 551.00 2332.27 eukaryotic translation elongation factor 1 delta, transcript variant X13
84. RPL23 ENSGALG00000001634 541.00 2289.94 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
85. CIRBP ENSGALG00000030918 539.00 2281.47 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
86. RPS24 ENSGALG00000004871 532.00 2251.84 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
87. MT-CO1 MT-CO1 529.00 2239.14
88. ENO1 ENSGALG00000002377 465.00 1968.25 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
89. ENSGALG00000028649 ENSGALG00000028649 446.00 1887.82
90. ATP5L ENSGALG00000006899 444.00 1879.36 ATP synthase, H+ transporting, mitochondrial Fo complex subunit G
91. ALDOC ENSGALG00000026077 440.00 1862.43 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
92. ENSGALG00000018384 ENSGALG00000018384 440.00 1862.43
93. HMGN2 HMGN2 432.00 1828.56
94. ATP5G3 430.00 1820.10 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
95. RPL31 ENSGALG00000016775 426.00 1803.17 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
96. CHCHD2 ENSGALG00000002495 414.00 1752.37 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:NCBI gene;Acc:417544]
97. ENSGALG00000022570 ENSGALG00000022570 403.00 1705.81
98. RPL22 ENSGALG00000000719 395.00 1671.95 ribosomal protein L22 [Source:NCBI gene;Acc:373937]
99. MMP15 ENSGALG00000038758 391.00 1655.02 matrix metallopeptidase 15 [Source:HGNC Symbol;Acc:HGNC:7161]
100. ZNF593 ENSGALG00000000542 386.00 1633.86 zinc finger protein 593 [Source:NCBI gene;Acc:419549]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA