Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_aorta, section s81.

Sample reads: 235,366. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. HBG1 HBG1 8600.00 36540.55
2. HBZ ENSGALG00000023740 8428.00 35809.73 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
3. HBE 5999.00 25489.15 hemoglobin subunit epsilon
4. MT-CO3 MT-CO3 5256.00 22332.22
5. RPLP0 ENSGALG00000023294 3161.00 13430.77 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
6. RPS29 ENSGALG00000012229 2347.00 9972.17 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
7. RPL35A ENSGALG00000007611, ENSGALG00000041230 2343.00 9955.17 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
8. gga-mir-3533 ENSGALG00000027736 2298.00 9763.97 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
9. RPS15 ENSGALG00000015195 2117.00 8994.92 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
10. RPS10 ENSGALG00000002813 2104.00 8939.69 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
11. RPS28 ENSGALG00000024398 1908.00 8106.90 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
12. EEF1A EEF1A 1907.00 8102.65
13. RPL4 ENSGALG00000007711 1882.00 7996.43 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
14. gga-mir-3527 gga-mir-3527 1867.00 7932.70
15. GAPDH ENSGALG00000014442 1858.00 7894.46 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
16. RPS2 ENSGALG00000005490 1669.00 7091.42 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
17. RPL23A ENSGALG00000003966 1613.00 6853.48 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
18. MT-ATP6 MT-ATP6 1546.00 6568.80
19. RPL13 ENSGALG00000006179 1515.00 6437.08 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
20. RPL15 ENSGALG00000011290 1515.00 6437.08 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
21. RPS4 RPS4 1447.00 6148.16
22. RPS8 ENSGALG00000010124 1426.00 6058.93 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
23. RPSA 1404.00 5965.46 ribosomal protein SA
24. RPLP1 ENSGALG00000030878 1372.00 5829.49 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
25. PPIA ENSGALG00000028600 1309.00 5561.81 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
26. RPS21 ENSGALG00000005338 1292.00 5489.58 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
27. RPS14 ENSGALG00000004588 1281.00 5442.84 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
28. MT-ND5 MT-ND5 1261.00 5357.86
29. RPL35 ENSGALG00000035677 1257.00 5340.87 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
30. RPL29 ENSGALG00000026978 1222.00 5192.16 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
31. RPL27A ENSGALG00000005948 1166.00 4954.22 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
32. RPL7A ENSGALG00000003197 1162.00 4937.22 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
33. RPL32 ENSGALG00000027142 1158.00 4920.23 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
34. RPS15A ENSGALG00000006771 1127.00 4788.51 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
35. RPS12 ENSGALG00000013990 1117.00 4746.02 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
36. RPL24 ENSGALG00000015339 1091.00 4635.55 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
37. RPL38 ENSGALG00000001465 1082.00 4597.31 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
38. RPL19 ENSGALG00000001658 1069.00 4542.07 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
39. RPL26 RPL26 1069.00 4542.07
40. MT-ND1 MT-ND1 1062.00 4512.33
41. MT-ND6 MT-ND6 1046.00 4444.35
42. MDK ENSGALG00000008367 1026.00 4359.37 midkine [Source:NCBI gene;Acc:423196]
43. RPL12 ENSGALG00000008806 1023.00 4346.63 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
44. RPL27 ENSGALG00000002837 1020.00 4333.88 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
45. RPL6 ENSGALG00000004818 996.00 4231.90 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
46. RPL18A 990.00 4206.41 ribosomal protein L18a
47. MT-ND3 MT-ND3 967.00 4108.69
48. RPL14 ENSGALG00000043379 962.00 4087.44 ribosomal protein L14
49. RPL36 ENSGALG00000000474 962.00 4087.44 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
50. RPS11 ENSGALG00000017299 945.00 4015.21 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
51. RPL8 ENSGALG00000016232 940.00 3993.97 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
52. RPS16 ENSGALG00000026490 913.00 3879.25 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
53. RPS27A ENSGALG00000036790 896.00 3807.01 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
54. MT-ND4 MT-ND4 892.00 3790.02
55. GNB2L1 ENSGALG00000000122 834.00 3543.58 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
56. RPS23 ENSGALG00000015617 828.00 3518.09 ribosomal protein S23
57. RPS7 ENSGALG00000016392 822.00 3492.60 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
58. RPL37A ENSGALG00000011472 800.00 3399.12 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
59. SNRPD1 ENSGALG00000041334 780.00 3314.14 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
60. RPL21 ENSGALG00000027035 769.00 3267.40 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
61. RPS3A ENSGALG00000010077 761.00 3233.41 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
62. RPS25 ENSGALG00000007699 730.00 3101.70 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
63. RPL36AL ENSGALG00000004952 710.00 3016.72 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
64. TCEB3 ENSGALG00000034625 710.00 3016.72 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
65. TMSB4X ENSGALG00000026383 702.00 2982.73 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
66. RPL5 ENSGALG00000005922 699.00 2969.98 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
67. RPL7 ENSGALG00000035252 678.00 2880.75 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
68. NME2 ENSGALG00000002932 665.00 2825.52 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
69. RPS17 ENSGALG00000002157 659.00 2800.03 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
70. RPS3 ENSGALG00000017330 655.00 2783.03 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
71. MT-CYB MT-CYB 639.00 2715.05
72. RPS13 ENSGALG00000006096 633.00 2689.55 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
73. ENSGALG00000028992 ENSGALG00000028992 615.00 2613.07
74. FTH FTH 606.00 2574.83
75. ANP32B ENSGALG00000037483 596.00 2532.34 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
76. UBB ENSGALG00000004509 586.00 2489.86 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
77. RPL10A ENSGALG00000002644 584.00 2481.36 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
78. RPS20 ENSGALG00000014432 574.00 2438.87 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
79. RPS24 ENSGALG00000004871 574.00 2438.87 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
80. RPL37 ENSGALG00000014833 570.00 2421.87 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
81. RPS6 ENSGALG00000015082 563.00 2392.13 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
82. CIRBP ENSGALG00000030918 534.00 2268.91 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
83. EEF1D 530.00 2251.92 eukaryotic translation elongation factor 1 delta, transcript variant X13
84. ALDOC ENSGALG00000026077 524.00 2226.42 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
85. PRDX1 ENSGALG00000010243 524.00 2226.42 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
86. RPL23 ENSGALG00000001634 519.00 2205.18 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
87. ENSGALG00000028649 ENSGALG00000028649 511.00 2171.19
88. ENSGALG00000018384 ENSGALG00000018384 510.00 2166.94
89. MT-CO1 MT-CO1 473.00 2009.73
90. STMN1 ENSGALG00000001475 468.00 1988.49 stathmin 1 [Source:NCBI gene;Acc:396057]
91. ENO1 ENSGALG00000002377 445.00 1890.76 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
92. CRHOA CRHOA 413.00 1754.80
93. EIF5A2 ENSGALG00000009309 411.00 1746.30 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
94. LDHB ENSGALG00000035836 400.00 1699.56 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
95. PKM ENSGALG00000001992 395.00 1678.32 pyruvate kinase M1/2 [Source:NCBI gene;Acc:396456]
96. ATP5G3 380.00 1614.58 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
97. HMGN2 HMGN2 380.00 1614.58
98. MMP15 ENSGALG00000038758 373.00 1584.84 matrix metallopeptidase 15 [Source:HGNC Symbol;Acc:HGNC:7161]
99. ENSGALG00000022570 ENSGALG00000022570 361.00 1533.85
100. RPLP2 ENSGALG00000034811 353.00 1499.86 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA