Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_aorta, section s80.

Sample reads: 235,526. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. HBZ ENSGALG00000023740 9748.00 41391.02 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
2. HBG1 HBG1 9441.00 40087.47
3. MT-CO3 MT-CO3 7092.00 30113.37
4. HBE 4872.00 20687.02 hemoglobin subunit epsilon
5. RPL35A ENSGALG00000007611, ENSGALG00000041230 2577.00 10942.21 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
6. RPS10 ENSGALG00000002813 2372.00 10071.76 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
7. gga-mir-3533 ENSGALG00000027736 2249.00 9549.49 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
8. RPS15 ENSGALG00000015195 2213.00 9396.63 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
9. RPL4 ENSGALG00000007711 2078.00 8823.40 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
10. RPS29 ENSGALG00000012229 2051.00 8708.76 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
11. EEF1A EEF1A 1976.00 8390.30
12. gga-mir-3527 gga-mir-3527 1853.00 7868.03
13. RPL13 ENSGALG00000006179 1825.00 7749.14 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
14. RPLP0 ENSGALG00000023294 1807.00 7672.71 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
15. RPS8 ENSGALG00000010124 1763.00 7485.88 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
16. GAPDH ENSGALG00000014442 1643.00 6976.35 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
17. MT-ATP6 MT-ATP6 1537.00 6526.26
18. RPL23A ENSGALG00000003966 1483.00 6296.97 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
19. RPS2 ENSGALG00000005490 1437.00 6101.65 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
20. RPS15A ENSGALG00000006771 1425.00 6050.70 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
21. RPLP1 ENSGALG00000030878 1420.00 6029.47 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
22. RPL15 ENSGALG00000011290 1408.00 5978.51 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
23. RPS14 ENSGALG00000004588 1379.00 5855.38 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
24. RPL19 ENSGALG00000001658 1333.00 5660.06 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
25. RPS21 ENSGALG00000005338 1324.00 5621.84 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
26. RPL35 ENSGALG00000035677 1286.00 5460.49 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
27. MT-ND3 MT-ND3 1282.00 5443.51
28. RPL27A ENSGALG00000005948 1267.00 5379.81 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
29. RPS4 RPS4 1225.00 5201.48
30. RPL24 ENSGALG00000015339 1209.00 5133.54 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
31. RPL32 ENSGALG00000027142 1177.00 4997.66 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
32. RPSA 1173.00 4980.68 ribosomal protein SA
33. RPL7A ENSGALG00000003197 1143.00 4853.30 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
34. RPL29 ENSGALG00000026978 1118.00 4747.14 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
35. RPL38 ENSGALG00000001465 1109.00 4708.93 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
36. RPS28 ENSGALG00000024398 1104.00 4687.70 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
37. RPL36 ENSGALG00000000474 1069.00 4539.09 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
38. MT-ND1 MT-ND1 1062.00 4509.36
39. RPL6 ENSGALG00000004818 1060.00 4500.87 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
40. RPS16 ENSGALG00000026490 1024.00 4348.01 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
41. RPL36AL ENSGALG00000004952 992.00 4212.14 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
42. MT-ND5 MT-ND5 986.00 4186.66
43. RPL27 ENSGALG00000002837 985.00 4182.41 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
44. RPL26 RPL26 964.00 4093.24
45. RPL12 ENSGALG00000008806 950.00 4033.80 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
46. RPS12 ENSGALG00000013990 947.00 4021.06 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
47. RPL18A 916.00 3889.43 ribosomal protein L18a
48. RPS23 ENSGALG00000015617 916.00 3889.43 ribosomal protein S23
49. RPS7 ENSGALG00000016392 915.00 3885.19 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
50. MT-ND4 MT-ND4 904.00 3838.48
51. SNRPD1 ENSGALG00000041334 863.00 3664.39 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
52. PPIA ENSGALG00000028600 862.00 3660.14 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
53. RPL8 ENSGALG00000016232 847.00 3596.45 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
54. MDK ENSGALG00000008367 835.00 3545.50 midkine [Source:NCBI gene;Acc:423196]
55. RPS3A ENSGALG00000010077 825.00 3503.04 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
56. RPL14 ENSGALG00000043379 817.00 3469.07 ribosomal protein L14
57. RPL7 ENSGALG00000035252 766.00 3252.52 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
58. RPL37A ENSGALG00000011472 763.00 3239.78 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
59. RPL21 ENSGALG00000027035 752.00 3193.07 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
60. RPS27A ENSGALG00000036790 739.00 3137.87 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
61. TMSB4X ENSGALG00000026383 729.00 3095.41 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
62. ENSGALG00000028992 ENSGALG00000028992 716.00 3040.21
63. CIRBP ENSGALG00000030918 715.00 3035.96 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
64. RPL5 ENSGALG00000005922 711.00 3018.98 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
65. ANP32B ENSGALG00000037483 705.00 2993.50 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
66. RPS17 ENSGALG00000002157 701.00 2976.52 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
67. RPS24 ENSGALG00000004871 678.00 2878.86 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
68. RPS25 ENSGALG00000007699 663.00 2815.17 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
69. NME2 ENSGALG00000002932 658.00 2793.94 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
70. RPS13 ENSGALG00000006096 658.00 2793.94 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
71. MT-CYB MT-CYB 646.00 2742.98
72. PRDX1 ENSGALG00000010243 639.00 2713.26 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
73. RPL23 ENSGALG00000001634 638.00 2709.01 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
74. TCEB3 ENSGALG00000034625 619.00 2628.34 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
75. GNB2L1 ENSGALG00000000122 609.00 2585.88 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
76. RPL10A ENSGALG00000002644 584.00 2479.72 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
77. RPS3 ENSGALG00000017330 581.00 2466.99 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
78. ENO1 ENSGALG00000002377 555.00 2356.59 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
79. UBB ENSGALG00000004509 544.00 2309.88 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
80. EIF5A2 ENSGALG00000009309 542.00 2301.39 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
81. MT-CO1 MT-CO1 528.00 2241.94
82. MT-ND6 MT-ND6 527.00 2237.70
83. RPS11 ENSGALG00000017299 513.00 2178.25 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
84. FTH FTH 504.00 2140.04
85. EEF1D 500.00 2123.05 eukaryotic translation elongation factor 1 delta, transcript variant X13
86. STMN1 ENSGALG00000001475 496.00 2106.07 stathmin 1 [Source:NCBI gene;Acc:396057]
87. RPS6 ENSGALG00000015082 475.00 2016.90 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
88. RPL37 ENSGALG00000014833 470.00 1995.67 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
89. RPS20 ENSGALG00000014432 461.00 1957.45 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
90. CRHOA CRHOA 458.00 1944.72
91. RPL31 ENSGALG00000016775 448.00 1902.25 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
92. LDHB ENSGALG00000035836 424.00 1800.35 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
93. HMGN2 HMGN2 405.00 1719.67
94. RPL22 ENSGALG00000000719 394.00 1672.97 ribosomal protein L22 [Source:NCBI gene;Acc:373937]
95. ATP5L ENSGALG00000006899 374.00 1588.04 ATP synthase, H+ transporting, mitochondrial Fo complex subunit G
96. DYL1 ENSGALG00000007153 367.00 1558.32 dynein light chain 1 cytoplasmic [Source:NCBI gene;Acc:427708]
97. ATP5G3 366.00 1554.07 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
98. RAN ENSGALG00000002569 366.00 1554.07 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
99. SLC25A6_1 ENSGALG00000016691 355.00 1507.37 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
100. ZNF593 ENSGALG00000000542 350.00 1486.14 zinc finger protein 593 [Source:NCBI gene;Acc:419549]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA