Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_aorta, section s8.

Sample reads: 235,918. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 5673.00 24049.04
2. RPLP0 ENSGALG00000023294 3231.00 13696.89 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
3. RPL35A ENSGALG00000007611, ENSGALG00000041230 2469.00 10466.61 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
4. RPS10 ENSGALG00000002813 2428.00 10292.80 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
5. gga-mir-3533 ENSGALG00000027736 2396.00 10157.15 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
6. RPS15 ENSGALG00000015195 2284.00 9682.36 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
7. RPS29 ENSGALG00000012229 2177.00 9228.76 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
8. RPL4 ENSGALG00000007711 2142.00 9080.39 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
9. EEF1A EEF1A 2138.00 9063.43
10. GAPDH ENSGALG00000014442 2117.00 8974.41 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
11. gga-mir-3527 gga-mir-3527 2018.00 8554.73
12. RPL13 ENSGALG00000006179 1804.00 7647.54 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
13. MT-ATP6 MT-ATP6 1789.00 7583.95
14. RPL23A ENSGALG00000003966 1661.00 7041.33 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
15. RPS2 ENSGALG00000005490 1650.00 6994.70 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
16. RPL15 ENSGALG00000011290 1536.00 6511.43 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
17. RPS28 ENSGALG00000024398 1510.00 6401.21 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
18. RPS4 RPS4 1499.00 6354.58
19. RPL35 ENSGALG00000035677 1460.00 6189.25 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
20. RPSA 1446.00 6129.90 ribosomal protein SA
21. RPS8 ENSGALG00000010124 1392.00 5900.98 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
22. PPIA ENSGALG00000028600 1391.00 5896.74 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
23. MT-ND5 MT-ND5 1336.00 5663.58
24. MT-ND1 MT-ND1 1294.00 5485.54
25. RPL24 ENSGALG00000015339 1291.00 5472.82 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
26. RPL19 ENSGALG00000001658 1283.00 5438.91 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
27. RPL6 ENSGALG00000004818 1240.00 5256.62 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
28. RPS14 ENSGALG00000004588 1222.00 5180.31 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
29. RPL27A ENSGALG00000005948 1201.00 5091.29 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
30. RPLP1 ENSGALG00000030878 1201.00 5091.29 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
31. RPS15A ENSGALG00000006771 1176.00 4985.31 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
32. RPS21 ENSGALG00000005338 1175.00 4981.07 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
33. RPL7A ENSGALG00000003197 1121.00 4752.15 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
34. RPL27 ENSGALG00000002837 1086.00 4603.78 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
35. RPL36 ENSGALG00000000474 1077.00 4565.63 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
36. RPL32 ENSGALG00000027142 1051.00 4455.41 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
37. RPS27A ENSGALG00000036790 1023.00 4336.71 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
38. RPL29 ENSGALG00000026978 1014.00 4298.56 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
39. RPS12 ENSGALG00000013990 1009.00 4277.36 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
40. MT-ND3 MT-ND3 963.00 4082.36
41. RPL18A 960.00 4069.64 ribosomal protein L18a
42. RPL12 ENSGALG00000008806 954.00 4044.21 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
43. MT-ND4 MT-ND4 946.00 4010.29
44. SNRPD1 ENSGALG00000041334 937.00 3972.14 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
45. RPL38 ENSGALG00000001465 904.00 3832.25 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
46. GNB2L1 ENSGALG00000000122 897.00 3802.57 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
47. RPS23 ENSGALG00000015617 887.00 3760.18 ribosomal protein S23
48. RPS16 ENSGALG00000026490 886.00 3755.94 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
49. RPL7 ENSGALG00000035252 882.00 3738.98 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
50. MDK ENSGALG00000008367 874.00 3705.07 midkine [Source:NCBI gene;Acc:423196]
51. RPL26 RPL26 857.00 3633.00
52. RPS7 ENSGALG00000016392 843.00 3573.65 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
53. RPS11 ENSGALG00000017299 834.00 3535.50 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
54. RPL36AL ENSGALG00000004952 822.00 3484.63 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
55. RPS3A ENSGALG00000010077 813.00 3446.48 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
56. RPL8 ENSGALG00000016232 801.00 3395.61 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
57. MT-CYB MT-CYB 791.00 3353.22
58. RPL21 ENSGALG00000027035 785.00 3327.78 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
59. RPL14 ENSGALG00000043379 778.00 3298.11 ribosomal protein L14
60. CIRBP ENSGALG00000030918 768.00 3255.71 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
61. ANP32B ENSGALG00000037483 749.00 3175.17 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
62. RPS13 ENSGALG00000006096 733.00 3107.34 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
63. RPL5 ENSGALG00000005922 730.00 3094.62 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
64. RPL37A ENSGALG00000011472 729.00 3090.38 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
65. HBZ ENSGALG00000023740 721.00 3056.47 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
66. NME2 ENSGALG00000002932 704.00 2984.40 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
67. MT-ND6 MT-ND6 684.00 2899.62
68. TCEB3 ENSGALG00000034625 673.00 2852.99 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
69. RPS24 ENSGALG00000004871 656.00 2780.92 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
70. RPS25 ENSGALG00000007699 635.00 2691.90 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
71. HMGN2 HMGN2 630.00 2670.70
72. LDHB ENSGALG00000035836 625.00 2649.51 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
73. ENO1 ENSGALG00000002377 621.00 2632.55 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
74. RPL23 ENSGALG00000001634 621.00 2632.55 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
75. RPL10A ENSGALG00000002644 606.00 2568.96 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
76. MT-CO1 MT-CO1 604.00 2560.48
77. STMN1 ENSGALG00000001475 603.00 2556.24 stathmin 1 [Source:NCBI gene;Acc:396057]
78. RPS17 ENSGALG00000002157 601.00 2547.77 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
79. ENSGALG00000018384 ENSGALG00000018384 598.00 2535.05
80. PKM ENSGALG00000001992 585.00 2479.94 pyruvate kinase M1/2 [Source:NCBI gene;Acc:396456]
81. HBG1 HBG1 584.00 2475.70
82. ALDOC ENSGALG00000026077 580.00 2458.74 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
83. UBB ENSGALG00000004509 575.00 2437.55 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
84. EIF5A2 ENSGALG00000009309 569.00 2412.11 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
85. RPS3 ENSGALG00000017330 564.00 2390.91 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
86. ENSGALG00000028992 ENSGALG00000028992 550.00 2331.57
87. EEF1D 536.00 2272.22 eukaryotic translation elongation factor 1 delta, transcript variant X13
88. PRDX1 ENSGALG00000010243 531.00 2251.02 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
89. TMSB4X ENSGALG00000026383 530.00 2246.78 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
90. RPS20 ENSGALG00000014432 516.00 2187.43 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
91. ENSGALG00000028649 ENSGALG00000028649 514.00 2178.95
92. ATP5G3 501.00 2123.84 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
93. RPS6 ENSGALG00000015082 492.00 2085.69 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
94. MMP15 ENSGALG00000038758 453.00 1920.36 matrix metallopeptidase 15 [Source:HGNC Symbol;Acc:HGNC:7161]
95. HMGN5 ENSGALG00000007131 419.00 1776.23 high mobility group nucleosome binding domain 5, transcript variant X1
96. HBE 414.00 1755.03 hemoglobin subunit epsilon
97. RPL37 ENSGALG00000014833 413.00 1750.79 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
98. FTH FTH 411.00 1742.32
99. DYL1 ENSGALG00000007153 406.00 1721.12 dynein light chain 1 cytoplasmic [Source:NCBI gene;Acc:427708]
100. RAN ENSGALG00000002569 394.00 1670.25 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA