Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_aorta, section s79.

Sample reads: 235,914. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. HBZ ENSGALG00000023740 9736.00 41271.73 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
2. HBG1 HBG1 8387.00 35553.20
3. MT-CO3 MT-CO3 6105.00 25879.61
4. HBE 5492.00 23281.05 hemoglobin subunit epsilon
5. RPLP0 ENSGALG00000023294 2867.00 12153.45 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
6. RPS29 ENSGALG00000012229 2308.00 9783.81 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
7. gga-mir-3533 ENSGALG00000027736 2216.00 9393.81 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
8. RPS10 ENSGALG00000002813 2151.00 9118.27 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
9. RPL35A ENSGALG00000007611, ENSGALG00000041230 2097.00 8889.36 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
10. RPS15 ENSGALG00000015195 2063.00 8745.23 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
11. gga-mir-3527 gga-mir-3527 1829.00 7753.29
12. EEF1A EEF1A 1733.00 7346.33
13. RPL4 ENSGALG00000007711 1732.00 7342.09 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
14. MT-ATP6 MT-ATP6 1669.00 7075.03
15. GAPDH ENSGALG00000014442 1629.00 6905.47 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
16. RPS8 ENSGALG00000010124 1504.00 6375.58 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
17. RPL13 ENSGALG00000006179 1487.00 6303.52 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
18. RPS2 ENSGALG00000005490 1447.00 6133.96 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
19. RPL23A ENSGALG00000003966 1446.00 6129.72 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
20. RPS28 ENSGALG00000024398 1414.00 5994.07 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
21. RPSA 1396.00 5917.76 ribosomal protein SA
22. RPLP1 ENSGALG00000030878 1328.00 5629.50 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
23. PPIA ENSGALG00000028600 1295.00 5489.61 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
24. RPS4 RPS4 1272.00 5392.12
25. RPL15 ENSGALG00000011290 1270.00 5383.64 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
26. MT-ND5 MT-ND5 1239.00 5252.23
27. RPS21 ENSGALG00000005338 1180.00 5002.12 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
28. RPS14 ENSGALG00000004588 1143.00 4845.27 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
29. MT-ND3 MT-ND3 1133.00 4802.88
30. RPS15A ENSGALG00000006771 1120.00 4747.77 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
31. RPL27A ENSGALG00000005948 1118.00 4739.30 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
32. MT-ND1 MT-ND1 1108.00 4696.91
33. RPL35 ENSGALG00000035677 1099.00 4658.75 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
34. RPL29 ENSGALG00000026978 1098.00 4654.51 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
35. RPL19 ENSGALG00000001658 1052.00 4459.52 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
36. RPL24 ENSGALG00000015339 1048.00 4442.56 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
37. RPL7A ENSGALG00000003197 1029.00 4362.02 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
38. RPL38 ENSGALG00000001465 1012.00 4289.95 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
39. RPL32 ENSGALG00000027142 992.00 4205.17 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
40. RPL8 ENSGALG00000016232 976.00 4137.35 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
41. RPL6 ENSGALG00000004818 960.00 4069.52 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
42. RPL12 ENSGALG00000008806 944.00 4001.70 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
43. MDK ENSGALG00000008367 939.00 3980.50 midkine [Source:NCBI gene;Acc:423196]
44. RPS12 ENSGALG00000013990 927.00 3929.63 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
45. RPS16 ENSGALG00000026490 899.00 3810.94 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
46. RPL18A 894.00 3789.74 ribosomal protein L18a
47. MT-ND6 MT-ND6 892.00 3781.26
48. RPL36 ENSGALG00000000474 889.00 3768.55 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
49. RPL26 RPL26 884.00 3747.35
50. ENSGALG00000018384 ENSGALG00000018384 842.00 3569.31
51. MT-ND4 MT-ND4 827.00 3505.72
52. RPL21 ENSGALG00000027035 823.00 3488.77 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
53. RPL27 ENSGALG00000002837 819.00 3471.81 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
54. RPL14 ENSGALG00000043379 794.00 3365.83 ribosomal protein L14
55. RPS3A ENSGALG00000010077 776.00 3289.53 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
56. SNRPD1 ENSGALG00000041334 769.00 3259.86 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
57. RPS27A ENSGALG00000036790 762.00 3230.18 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
58. GNB2L1 ENSGALG00000000122 726.00 3077.58 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
59. MT-CYB MT-CYB 724.00 3069.10
60. RPS23 ENSGALG00000015617 711.00 3013.99 ribosomal protein S23
61. RPS7 ENSGALG00000016392 710.00 3009.75 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
62. RPS11 ENSGALG00000017299 709.00 3005.51 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
63. NME2 ENSGALG00000002932 698.00 2958.88 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
64. ANP32B ENSGALG00000037483 694.00 2941.92 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
65. RPL36AL ENSGALG00000004952 682.00 2891.06 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
66. RPL37A ENSGALG00000011472 663.00 2810.51 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
67. RPS25 ENSGALG00000007699 656.00 2780.84 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
68. RPL7 ENSGALG00000035252 649.00 2751.17 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
69. RPL5 ENSGALG00000005922 640.00 2713.01 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
70. RPL10A ENSGALG00000002644 615.00 2607.04 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
71. TCEB3 ENSGALG00000034625 608.00 2577.36 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
72. TMSB4X ENSGALG00000026383 607.00 2573.12 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
73. CIRBP ENSGALG00000030918 593.00 2513.78 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
74. FTH FTH 586.00 2484.10
75. STMN1 ENSGALG00000001475 582.00 2467.15 stathmin 1 [Source:NCBI gene;Acc:396057]
76. ENSGALG00000028992 ENSGALG00000028992 577.00 2445.95
77. RPL23 ENSGALG00000001634 573.00 2429.00 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
78. MT-CO1 MT-CO1 556.00 2356.93
79. RPS6 ENSGALG00000015082 556.00 2356.93 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
80. RPS24 ENSGALG00000004871 527.00 2234.00 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
81. RPS17 ENSGALG00000002157 521.00 2208.56 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
82. RPS3 ENSGALG00000017330 518.00 2195.85 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
83. RPS13 ENSGALG00000006096 517.00 2191.61 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
84. PRDX1 ENSGALG00000010243 514.00 2178.89 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
85. UBB ENSGALG00000004509 493.00 2089.87 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
86. RPL37 ENSGALG00000014833 479.00 2030.52 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
87. EEF1D 478.00 2026.28 eukaryotic translation elongation factor 1 delta, transcript variant X13
88. RPS20 ENSGALG00000014432 471.00 1996.61 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
89. ENSGALG00000018386 ENSGALG00000018386 460.00 1949.98
90. ENO1 ENSGALG00000002377 425.00 1801.61 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
91. CRHOA CRHOA 418.00 1771.94
92. EIF5A2 ENSGALG00000009309 401.00 1699.87 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
93. HMGN2 HMGN2 398.00 1687.16
94. ENSGALG00000022570 ENSGALG00000022570 389.00 1649.00
95. HMGN5 ENSGALG00000007131 388.00 1644.76 high mobility group nucleosome binding domain 5, transcript variant X1
96. ALDOC ENSGALG00000026077 381.00 1615.09 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
97. ENSGALG00000028649 ENSGALG00000028649 379.00 1606.61
98. MMP15 ENSGALG00000038758 379.00 1606.61 matrix metallopeptidase 15 [Source:HGNC Symbol;Acc:HGNC:7161]
99. RPL31 ENSGALG00000016775 363.00 1538.79 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
100. CHCHD2 ENSGALG00000002495 355.00 1504.87 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:NCBI gene;Acc:417544]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA