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Experiment Chicken_E3_aorta, section s78.

Sample reads: 236,391. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. HBZ ENSGALG00000023740 14005.00 59250.83 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
2. HBG1 HBG1 12683.00 53657.86
3. HBE 6736.00 28497.94 hemoglobin subunit epsilon
4. MT-CO3 MT-CO3 4532.00 19173.49
5. RPLP0 ENSGALG00000023294 2960.00 12522.85 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
6. RPS15 ENSGALG00000015195 2477.00 10479.42 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
7. RPS29 ENSGALG00000012229 2175.00 9201.75 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
8. gga-mir-3533 ENSGALG00000027736 2156.00 9121.37 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
9. RPS10 ENSGALG00000002813 2068.00 8749.07 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
10. RPL35A ENSGALG00000007611, ENSGALG00000041230 1998.00 8452.92 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
11. RPS2 ENSGALG00000005490 1904.00 8055.24 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
12. GAPDH ENSGALG00000014442 1863.00 7881.78 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
13. RPL13 ENSGALG00000006179 1822.00 7708.32 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
14. RPL4 ENSGALG00000007711 1784.00 7547.55 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
15. EEF1A EEF1A 1775.00 7509.48
16. RPL15 ENSGALG00000011290 1730.00 7319.10 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
17. RPS28 ENSGALG00000024398 1624.00 6870.64 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
18. RPL23A ENSGALG00000003966 1489.00 6299.50 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
19. RPL35 ENSGALG00000035677 1450.00 6134.50 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
20. RPS8 ENSGALG00000010124 1417.00 5994.89 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
21. RPLP1 ENSGALG00000030878 1393.00 5893.35 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
22. RPS4 RPS4 1298.00 5491.44
23. gga-mir-3527 gga-mir-3527 1287.00 5444.90
24. RPS21 ENSGALG00000005338 1254.00 5305.29 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
25. RPL29 ENSGALG00000026978 1237.00 5233.36 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
26. RPS15A ENSGALG00000006771 1233.00 5216.44 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
27. RPSA 1217.00 5148.75 ribosomal protein SA
28. RPL38 ENSGALG00000001465 1174.00 4966.83 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
29. RPL32 ENSGALG00000027142 1162.00 4916.06 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
30. RPS14 ENSGALG00000004588 1159.00 4903.37 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
31. RPL27A ENSGALG00000005948 1151.00 4869.53 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
32. PPIA ENSGALG00000028600 1134.00 4797.60 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
33. RPL19 ENSGALG00000001658 1083.00 4581.84 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
34. RPL7A ENSGALG00000003197 1068.00 4518.38 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
35. MT-ATP6 MT-ATP6 1057.00 4471.84
36. RPL6 ENSGALG00000004818 1042.00 4408.38 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
37. RPL24 ENSGALG00000015339 1035.00 4378.77 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
38. RPS11 ENSGALG00000017299 982.00 4154.54 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
39. RPL26 RPL26 979.00 4141.85
40. RPS12 ENSGALG00000013990 961.00 4065.69 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
41. RPL36 ENSGALG00000000474 933.00 3947.23 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
42. MT-ND3 MT-ND3 927.00 3921.85
43. RPL27 ENSGALG00000002837 906.00 3833.01 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
44. RPS23 ENSGALG00000015617 898.00 3799.16 ribosomal protein S23
45. RPS16 ENSGALG00000026490 870.00 3680.70 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
46. RPL12 ENSGALG00000008806 856.00 3621.47 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
47. MT-ND5 MT-ND5 848.00 3587.63
48. SNRPD1 ENSGALG00000041334 841.00 3558.01 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
49. RPL18A 824.00 3486.09 ribosomal protein L18a
50. MT-ND1 MT-ND1 818.00 3460.71
51. GNB2L1 ENSGALG00000000122 811.00 3431.09 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
52. RPS27A ENSGALG00000036790 810.00 3426.86 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
53. MDK ENSGALG00000008367 776.00 3283.02 midkine [Source:NCBI gene;Acc:423196]
54. RPL37A ENSGALG00000011472 775.00 3278.79 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
55. RPS7 ENSGALG00000016392 772.00 3266.09 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
56. RPL36AL ENSGALG00000004952 768.00 3249.17 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
57. RPL8 ENSGALG00000016232 749.00 3168.79 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
58. RPL14 ENSGALG00000043379 739.00 3126.48 ribosomal protein L14
59. NME2 ENSGALG00000002932 733.00 3101.10 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
60. RPL5 ENSGALG00000005922 707.00 2991.10 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
61. RPL21 ENSGALG00000027035 677.00 2864.18 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
62. FTH FTH 675.00 2855.72
63. RPS25 ENSGALG00000007699 649.00 2745.72 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
64. MT-ND4 MT-ND4 629.00 2661.10
65. RPL7 ENSGALG00000035252 626.00 2648.41 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
66. RPS13 ENSGALG00000006096 622.00 2631.49 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
67. RPS3A ENSGALG00000010077 621.00 2627.26 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
68. TMSB4X ENSGALG00000026383 616.00 2606.11 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
69. RPS3 ENSGALG00000017330 604.00 2555.34 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
70. RPS17 ENSGALG00000002157 599.00 2534.18 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
71. MT-ND6 MT-ND6 595.00 2517.26
72. ANP32B ENSGALG00000037483 594.00 2513.03 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
73. UBB ENSGALG00000004509 588.00 2487.65 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
74. CIRBP ENSGALG00000030918 586.00 2479.18 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
75. RPL10A ENSGALG00000002644 583.00 2466.49 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
76. ENSGALG00000028992 ENSGALG00000028992 565.00 2390.34
77. PRDX1 ENSGALG00000010243 565.00 2390.34 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
78. RPL23 ENSGALG00000001634 534.00 2259.19 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
79. TCEB3 ENSGALG00000034625 527.00 2229.57 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
80. RPS24 ENSGALG00000004871 514.00 2174.58 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
81. RPS6 ENSGALG00000015082 510.00 2157.65 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
82. EEF1D 495.00 2094.19 eukaryotic translation elongation factor 1 delta, transcript variant X13
83. MMP15 ENSGALG00000038758 480.00 2030.73 matrix metallopeptidase 15 [Source:HGNC Symbol;Acc:HGNC:7161]
84. STMN1 ENSGALG00000001475 480.00 2030.73 stathmin 1 [Source:NCBI gene;Acc:396057]
85. RPL37 ENSGALG00000014833 475.00 2009.58 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
86. RPS20 ENSGALG00000014432 472.00 1996.89 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
87. ENO1 ENSGALG00000002377 452.00 1912.27 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
88. EIF5A2 ENSGALG00000009309 450.00 1903.81 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
89. MT-CYB MT-CYB 449.00 1899.58
90. MT-CO1 MT-CO1 447.00 1891.12
91. ENSGALG00000028649 ENSGALG00000028649 427.00 1806.51
92. RPL31 ENSGALG00000016775 418.00 1768.43 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
93. ATP5L ENSGALG00000006899 412.00 1743.04 ATP synthase, H+ transporting, mitochondrial Fo complex subunit G
94. ALDOC ENSGALG00000026077 407.00 1721.89 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
95. HMGN2 HMGN2 404.00 1709.20
96. ZNF593 ENSGALG00000000542 404.00 1709.20 zinc finger protein 593 [Source:NCBI gene;Acc:419549]
97. ENSGALG00000018384 ENSGALG00000018384 394.00 1666.89
98. ATP5G3 384.00 1624.59 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
99. CHCHD2 ENSGALG00000002495 380.00 1607.66 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:NCBI gene;Acc:417544]
100. LDHB ENSGALG00000035836 371.00 1569.59 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA