Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_aorta, section s77.

Sample reads: 235,996. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. HBZ ENSGALG00000023740 9063.00 38405.15 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
2. HBG1 HBG1 8882.00 37638.14
3. HBE 6361.00 26955.22 hemoglobin subunit epsilon
4. MT-CO3 MT-CO3 5406.00 22908.33
5. RPLP0 ENSGALG00000023294 2954.00 12517.80 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
6. gga-mir-3533 ENSGALG00000027736 2735.00 11589.77 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
7. RPS10 ENSGALG00000002813 2331.00 9877.79 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
8. RPL35A ENSGALG00000007611, ENSGALG00000041230 2264.00 9593.87 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
9. RPS29 ENSGALG00000012229 2249.00 9530.31 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
10. RPS15 ENSGALG00000015195 2237.00 9479.46 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
11. gga-mir-3527 gga-mir-3527 2146.00 9093.84
12. RPL4 ENSGALG00000007711 1987.00 8420.06 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
13. RPL13 ENSGALG00000006179 1698.00 7195.40 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
14. GAPDH ENSGALG00000014442 1673.00 7089.46 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
15. EEF1A EEF1A 1581.00 6699.61
16. RPS2 ENSGALG00000005490 1551.00 6572.48 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
17. RPS28 ENSGALG00000024398 1545.00 6547.05 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
18. PPIA ENSGALG00000028600 1541.00 6530.10 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
19. RPL15 ENSGALG00000011290 1511.00 6402.98 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
20. RPL23A ENSGALG00000003966 1469.00 6225.00 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
21. MT-ATP6 MT-ATP6 1467.00 6216.52
22. RPS4 RPS4 1432.00 6068.21
23. RPSA 1421.00 6021.59 ribosomal protein SA
24. RPS8 ENSGALG00000010124 1371.00 5809.72 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
25. RPLP1 ENSGALG00000030878 1266.00 5364.77 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
26. MT-ND5 MT-ND5 1243.00 5267.31
27. MT-ND1 MT-ND1 1242.00 5263.07
28. RPL24 ENSGALG00000015339 1201.00 5089.33 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
29. RPS21 ENSGALG00000005338 1178.00 4991.86 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
30. MT-ND3 MT-ND3 1175.00 4979.15
31. RPL19 ENSGALG00000001658 1147.00 4860.50 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
32. RPS15A ENSGALG00000006771 1127.00 4775.75 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
33. RPL32 ENSGALG00000027142 1121.00 4750.32 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
34. RPL35 ENSGALG00000035677 1097.00 4648.62 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
35. RPL29 ENSGALG00000026978 1070.00 4534.21 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
36. RPS14 ENSGALG00000004588 1066.00 4517.26 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
37. RPL27A ENSGALG00000005948 1039.00 4402.84 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
38. RPL7A ENSGALG00000003197 999.00 4233.34 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
39. RPL27 ENSGALG00000002837 994.00 4212.15 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
40. MT-ND6 MT-ND6 979.00 4148.59
41. RPL18A 970.00 4110.45 ribosomal protein L18a
42. RPL12 ENSGALG00000008806 966.00 4093.50 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
43. MT-ND4 MT-ND4 939.00 3979.08
44. RPL36 ENSGALG00000000474 937.00 3970.61 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
45. RPL6 ENSGALG00000004818 918.00 3890.09 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
46. RPS23 ENSGALG00000015617 907.00 3843.48 ribosomal protein S23
47. RPS12 ENSGALG00000013990 906.00 3839.24 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
48. RPL38 ENSGALG00000001465 893.00 3784.15 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
49. RPS11 ENSGALG00000017299 891.00 3775.68 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
50. MDK ENSGALG00000008367 888.00 3762.97 midkine [Source:NCBI gene;Acc:423196]
51. SNRPD1 ENSGALG00000041334 862.00 3652.79 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
52. RPL26 RPL26 765.00 3241.75
53. RPS16 ENSGALG00000026490 763.00 3233.27 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
54. RPL8 ENSGALG00000016232 758.00 3212.08 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
55. GNB2L1 ENSGALG00000000122 757.00 3207.84 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
56. RPS3A ENSGALG00000010077 755.00 3199.37 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
57. RPL14 ENSGALG00000043379 739.00 3131.57 ribosomal protein L14
58. RPL36AL ENSGALG00000004952 735.00 3114.62 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
59. RPS27A ENSGALG00000036790 719.00 3046.82 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
60. RPL7 ENSGALG00000035252 692.00 2932.40 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
61. MT-CYB MT-CYB 687.00 2911.21
62. NME2 ENSGALG00000002932 681.00 2885.79 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
63. RPS13 ENSGALG00000006096 675.00 2860.36 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
64. RPS7 ENSGALG00000016392 669.00 2834.94 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
65. ANP32B ENSGALG00000037483 665.00 2817.99 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
66. RPL21 ENSGALG00000027035 665.00 2817.99 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
67. RPL5 ENSGALG00000005922 659.00 2792.56 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
68. TMSB4X ENSGALG00000026383 657.00 2784.09 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
69. RPL37A ENSGALG00000011472 640.00 2712.05 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
70. CIRBP ENSGALG00000030918 637.00 2699.34 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
71. FTH FTH 637.00 2699.34
72. ALDOC ENSGALG00000026077 634.00 2686.62 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
73. RPS24 ENSGALG00000004871 613.00 2597.63 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
74. RPS17 ENSGALG00000002157 603.00 2555.26 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
75. PRDX1 ENSGALG00000010243 600.00 2542.55 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
76. TCEB3 ENSGALG00000034625 571.00 2419.66 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
77. RPS25 ENSGALG00000007699 568.00 2406.94 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
78. RPS3 ENSGALG00000017330 543.00 2301.00 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
79. UBB ENSGALG00000004509 536.00 2271.34 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
80. RPL23 ENSGALG00000001634 534.00 2262.87 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
81. ENSGALG00000028992 ENSGALG00000028992 530.00 2245.91
82. EEF1D 529.00 2241.68 eukaryotic translation elongation factor 1 delta, transcript variant X13
83. MT-CO1 MT-CO1 513.00 2173.88
84. HMGN2 HMGN2 494.00 2093.36
85. ENO1 ENSGALG00000002377 485.00 2055.22 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
86. MMP15 ENSGALG00000038758 480.00 2034.04 matrix metallopeptidase 15 [Source:HGNC Symbol;Acc:HGNC:7161]
87. ENSGALG00000028649 ENSGALG00000028649 465.00 1970.47
88. RPL10A ENSGALG00000002644 461.00 1953.52 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
89. RPL37 ENSGALG00000014833 458.00 1940.81 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
90. EIF5A2 ENSGALG00000009309 448.00 1898.43 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
91. STMN1 ENSGALG00000001475 441.00 1868.77 stathmin 1 [Source:NCBI gene;Acc:396057]
92. LDHB ENSGALG00000035836 436.00 1847.58 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
93. ATP5G3 420.00 1779.78 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
94. RPS20 ENSGALG00000014432 416.00 1762.83 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
95. PKM ENSGALG00000001992 409.00 1733.17 pyruvate kinase M1/2 [Source:NCBI gene;Acc:396456]
96. RPS6 ENSGALG00000015082 405.00 1716.22 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
97. ZNF593 ENSGALG00000000542 379.00 1606.04 zinc finger protein 593 [Source:NCBI gene;Acc:419549]
98. ENSGALG00000022570 ENSGALG00000022570 366.00 1550.95
99. RPL31 ENSGALG00000016775 359.00 1521.29 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
100. SLC25A6_1 ENSGALG00000016691 358.00 1517.05 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA