Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_aorta, section s75.

Sample reads: 235,463. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. HBZ ENSGALG00000023740 14837.00 63015.77 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
2. HBG1 HBG1 14513.00 61639.68
3. HBE 8624.00 36627.89 hemoglobin subunit epsilon
4. RPLP0 ENSGALG00000023294 3496.00 14848.23 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
5. RPL35A ENSGALG00000007611, ENSGALG00000041230 2768.00 11756.26 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
6. RPS15 ENSGALG00000015195 2744.00 11654.33 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
7. RPS29 ENSGALG00000012229 2698.00 11458.96 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
8. gga-mir-3533 ENSGALG00000027736 2354.00 9997.92 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
9. MT-CO3 MT-CO3 2258.00 9590.19
10. RPL4 ENSGALG00000007711 2170.00 9216.43 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
11. RPS28 ENSGALG00000024398 2168.00 9207.94 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
12. RPS2 ENSGALG00000005490 2145.00 9110.25 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
13. GAPDH ENSGALG00000014442 2051.00 8711.02 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
14. RPL13 ENSGALG00000006179 2045.00 8685.53 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
15. RPL15 ENSGALG00000011290 2035.00 8643.06 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
16. RPS10 ENSGALG00000002813 1903.00 8082.43 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
17. EEF1A EEF1A 1797.00 7632.23
18. RPL23A ENSGALG00000003966 1697.00 7207.51 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
19. RPS8 ENSGALG00000010124 1641.00 6969.66 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
20. RPL38 ENSGALG00000001465 1490.00 6328.33 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
21. RPLP1 ENSGALG00000030878 1490.00 6328.33 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
22. RPL29 ENSGALG00000026978 1473.00 6256.13 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
23. RPL27A ENSGALG00000005948 1469.00 6239.14 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
24. RPL35 ENSGALG00000035677 1432.00 6082.00 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
25. RPS21 ENSGALG00000005338 1432.00 6082.00 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
26. RPS4 RPS4 1408.00 5980.06
27. RPL32 ENSGALG00000027142 1391.00 5907.86 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
28. RPS14 ENSGALG00000004588 1340.00 5691.25 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
29. RPL7A ENSGALG00000003197 1336.00 5674.26 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
30. RPSA 1299.00 5517.12 ribosomal protein SA
31. RPS15A ENSGALG00000006771 1293.00 5491.64 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
32. PPIA ENSGALG00000028600 1209.00 5134.87 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
33. RPL24 ENSGALG00000015339 1203.00 5109.39 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
34. RPL6 ENSGALG00000004818 1190.00 5054.17 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
35. RPL26 RPL26 1186.00 5037.18
36. RPL19 ENSGALG00000001658 1154.00 4901.27 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
37. RPS16 ENSGALG00000026490 1123.00 4769.61 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
38. RPL8 ENSGALG00000016232 1108.00 4705.90 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
39. RPL36 ENSGALG00000000474 1057.00 4489.29 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
40. GNB2L1 ENSGALG00000000122 1029.00 4370.37 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
41. RPS12 ENSGALG00000013990 1002.00 4255.70 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
42. RPL12 ENSGALG00000008806 988.00 4196.24 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
43. RPL18A 955.00 4056.08 ribosomal protein L18a
44. SNRPD1 ENSGALG00000041334 949.00 4030.60 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
45. RPL27 ENSGALG00000002837 938.00 3983.88 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
46. RPS3A ENSGALG00000010077 934.00 3966.89 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
47. RPS27A ENSGALG00000036790 918.00 3898.93 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
48. RPS23 ENSGALG00000015617 877.00 3724.80 ribosomal protein S23
49. RPL14 ENSGALG00000043379 869.00 3690.82 ribosomal protein L14
50. gga-mir-3527 gga-mir-3527 852.00 3618.62
51. MT-ATP6 MT-ATP6 836.00 3550.66
52. NME2 ENSGALG00000002932 801.00 3402.01 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
53. RPL7 ENSGALG00000035252 787.00 3342.55 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
54. RPL36AL ENSGALG00000004952 785.00 3334.06 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
55. RPS25 ENSGALG00000007699 777.00 3300.08 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
56. RPL10A ENSGALG00000002644 762.00 3236.37 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
57. RPL5 ENSGALG00000005922 760.00 3227.88 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
58. MDK ENSGALG00000008367 754.00 3202.39 midkine [Source:NCBI gene;Acc:423196]
59. RPS11 ENSGALG00000017299 754.00 3202.39 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
60. FTH FTH 752.00 3193.90
61. RPL21 ENSGALG00000027035 736.00 3125.94 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
62. ENSGALG00000028992 ENSGALG00000028992 723.00 3070.73
63. RPS7 ENSGALG00000016392 717.00 3045.25 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
64. RPS17 ENSGALG00000002157 715.00 3036.75 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
65. RPS20 ENSGALG00000014432 693.00 2943.31 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
66. RPS3 ENSGALG00000017330 680.00 2888.10 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
67. TCEB3 ENSGALG00000034625 670.00 2845.63 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
68. TMSB4X ENSGALG00000026383 662.00 2811.65 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
69. RPL37A ENSGALG00000011472 654.00 2777.67 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
70. RPL37 ENSGALG00000014833 641.00 2722.46 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
71. CIRBP ENSGALG00000030918 633.00 2688.48 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
72. MT-ND1 MT-ND1 623.00 2646.01
73. RPS13 ENSGALG00000006096 619.00 2629.02 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
74. RPS6 ENSGALG00000015082 568.00 2412.41 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
75. RPL23 ENSGALG00000001634 547.00 2323.22 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
76. PRDX1 ENSGALG00000010243 508.00 2157.58 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
77. ANP32B ENSGALG00000037483 502.00 2132.10 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
78. MT-ND5 MT-ND5 498.00 2115.11
79. UBB ENSGALG00000004509 498.00 2115.11 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
80. EEF1D 461.00 1957.96 eukaryotic translation elongation factor 1 delta, transcript variant X13
81. STMN1 ENSGALG00000001475 461.00 1957.96 stathmin 1 [Source:NCBI gene;Acc:396057]
82. ATP5L ENSGALG00000006899 453.00 1923.98 ATP synthase, H+ transporting, mitochondrial Fo complex subunit G
83. MT-ND3 MT-ND3 447.00 1898.50
84. RPS24 ENSGALG00000004871 445.00 1890.01 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
85. ALDOC ENSGALG00000026077 443.00 1881.51 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
86. RPL31 ENSGALG00000016775 434.00 1843.29 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
87. RPL22 ENSGALG00000000719 432.00 1834.79 ribosomal protein L22 [Source:NCBI gene;Acc:373937]
88. MT-ND6 MT-ND6 430.00 1826.30
89. ATP5G3 428.00 1817.80 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
90. MT-CYB MT-CYB 422.00 1792.32
91. FKBP12 FKBP12 416.00 1766.84
92. LDHB ENSGALG00000035836 404.00 1715.87 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
93. ENO1 ENSGALG00000002377 387.00 1643.67 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
94. MT-ND4 MT-ND4 385.00 1635.17
95. ENSGALG00000022570 ENSGALG00000022570 377.00 1601.20
96. MMP15 ENSGALG00000038758 377.00 1601.20 matrix metallopeptidase 15 [Source:HGNC Symbol;Acc:HGNC:7161]
97. CHCHD2 ENSGALG00000002495 369.00 1567.22 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:NCBI gene;Acc:417544]
98. HMGN2 HMGN2 369.00 1567.22
99. ENSGALG00000028649 ENSGALG00000028649 363.00 1541.74
100. ZNF593 ENSGALG00000000542 350.00 1486.52 zinc finger protein 593 [Source:NCBI gene;Acc:419549]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA