Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_aorta, section s72.

Sample reads: 236,211. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. HBZ ENSGALG00000023740 6783.00 28717.80 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
2. HBG1 HBG1 6592.00 27909.14
3. MT-CO3 MT-CO3 6546.00 27714.39
4. HBE 4072.00 17239.99 hemoglobin subunit epsilon
5. RPLP0 ENSGALG00000023294 2856.00 12091.70 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
6. gga-mir-3533 ENSGALG00000027736 2362.00 10000.21 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
7. RPL35A ENSGALG00000007611, ENSGALG00000041230 2222.00 9407.48 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
8. RPS29 ENSGALG00000012229 2175.00 9208.49 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
9. RPS15 ENSGALG00000015195 2174.00 9204.26 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
10. RPS10 ENSGALG00000002813 2151.00 9106.88 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
11. gga-mir-3527 gga-mir-3527 2134.00 9034.91
12. EEF1A EEF1A 1931.00 8175.45
13. GAPDH ENSGALG00000014442 1822.00 7713.97 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
14. MT-ATP6 MT-ATP6 1803.00 7633.52
15. RPL4 ENSGALG00000007711 1792.00 7586.95 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
16. RPL13 ENSGALG00000006179 1678.00 7104.30 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
17. RPS2 ENSGALG00000005490 1637.00 6930.71 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
18. RPL15 ENSGALG00000011290 1567.00 6634.35 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
19. RPS8 ENSGALG00000010124 1457.00 6168.63 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
20. RPLP1 ENSGALG00000030878 1436.00 6079.72 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
21. RPL23A ENSGALG00000003966 1381.00 5846.86 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
22. RPS4 RPS4 1361.00 5762.19
23. PPIA ENSGALG00000028600 1316.00 5571.67 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
24. RPSA 1298.00 5495.46 ribosomal protein SA
25. RPS28 ENSGALG00000024398 1290.00 5461.59 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
26. RPL35 ENSGALG00000035677 1287.00 5448.89 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
27. MT-ND5 MT-ND5 1264.00 5351.51
28. MT-ND3 MT-ND3 1240.00 5249.90
29. RPL19 ENSGALG00000001658 1239.00 5245.67 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
30. RPS14 ENSGALG00000004588 1239.00 5245.67 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
31. RPL27A ENSGALG00000005948 1204.00 5097.48 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
32. RPS15A ENSGALG00000006771 1196.00 5063.61 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
33. MT-ND1 MT-ND1 1173.00 4966.24
34. RPL32 ENSGALG00000027142 1140.00 4826.52 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
35. RPS21 ENSGALG00000005338 1131.00 4788.42 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
36. RPL6 ENSGALG00000004818 1089.00 4610.60 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
37. RPL29 ENSGALG00000026978 1072.00 4538.62 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
38. RPL24 ENSGALG00000015339 1036.00 4386.21 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
39. RPS11 ENSGALG00000017299 1017.00 4305.76 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
40. MT-ND6 MT-ND6 1008.00 4267.66
41. RPL38 ENSGALG00000001465 983.00 4161.82 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
42. RPS23 ENSGALG00000015617 978.00 4140.65 ribosomal protein S23
43. RPL12 ENSGALG00000008806 964.00 4081.37 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
44. RPL7A ENSGALG00000003197 961.00 4068.67 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
45. RPS12 ENSGALG00000013990 959.00 4060.20 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
46. RPL18A 954.00 4039.04 ribosomal protein L18a
47. RPL36 ENSGALG00000000474 954.00 4039.04 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
48. RPL27 ENSGALG00000002837 912.00 3861.22 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
49. MT-ND4 MT-ND4 901.00 3814.64
50. SNRPD1 ENSGALG00000041334 888.00 3759.61 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
51. RPL26 RPL26 855.00 3619.89
52. MDK ENSGALG00000008367 840.00 3556.38 midkine [Source:NCBI gene;Acc:423196]
53. RPS16 ENSGALG00000026490 839.00 3552.15 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
54. RPS7 ENSGALG00000016392 839.00 3552.15 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
55. RPL36AL ENSGALG00000004952 831.00 3518.28 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
56. RPL37A ENSGALG00000011472 823.00 3484.41 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
57. RPL21 ENSGALG00000027035 777.00 3289.65 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
58. RPL8 ENSGALG00000016232 772.00 3268.49 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
59. RPS3A ENSGALG00000010077 769.00 3255.78 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
60. RPS27A ENSGALG00000036790 759.00 3213.45 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
61. RPL7 ENSGALG00000035252 750.00 3175.34 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
62. MT-CYB MT-CYB 742.00 3141.47
63. RPL14 ENSGALG00000043379 722.00 3056.80 ribosomal protein L14
64. NME2 ENSGALG00000002932 719.00 3044.09 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
65. RPS13 ENSGALG00000006096 710.00 3005.99 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
66. GNB2L1 ENSGALG00000000122 707.00 2993.29 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
67. RPL5 ENSGALG00000005922 697.00 2950.95 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
68. CIRBP ENSGALG00000030918 688.00 2912.85 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
69. RPS25 ENSGALG00000007699 688.00 2912.85 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
70. TMSB4X ENSGALG00000026383 658.00 2785.83 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
71. ANP32B ENSGALG00000037483 644.00 2726.56 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
72. TCEB3 ENSGALG00000034625 618.00 2616.48 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
73. RPS17 ENSGALG00000002157 611.00 2586.85 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
74. PRDX1 ENSGALG00000010243 590.00 2497.94 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
75. UBB ENSGALG00000004509 587.00 2485.23 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
76. RPL10A ENSGALG00000002644 585.00 2476.77 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
77. ENSGALG00000028992 ENSGALG00000028992 575.00 2434.43
78. RPS24 ENSGALG00000004871 569.00 2409.03 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
79. MT-CO1 MT-CO1 565.00 2392.09
80. FTH FTH 564.00 2387.86
81. RPS6 ENSGALG00000015082 547.00 2315.88 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
82. RPS3 ENSGALG00000017330 537.00 2273.55 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
83. STMN1 ENSGALG00000001475 509.00 2155.00 stathmin 1 [Source:NCBI gene;Acc:396057]
84. RPL23 ENSGALG00000001634 507.00 2146.53 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
85. RPS20 ENSGALG00000014432 499.00 2112.66 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
86. ENO1 ENSGALG00000002377 490.00 2074.56 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
87. EIF5A2 ENSGALG00000009309 488.00 2066.09 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
88. ALDOC ENSGALG00000026077 483.00 2044.92 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
89. ENSGALG00000028649 ENSGALG00000028649 481.00 2036.45
90. EEF1D 478.00 2023.75 eukaryotic translation elongation factor 1 delta, transcript variant X13
91. RPL37 ENSGALG00000014833 471.00 1994.12 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
92. HMGN2 HMGN2 469.00 1985.65
93. ATP5L ENSGALG00000006899 408.00 1727.39 ATP synthase, H+ transporting, mitochondrial Fo complex subunit G
94. RPL31 ENSGALG00000016775 406.00 1718.92 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
95. CRHOA CRHOA 391.00 1655.41
96. LDHB ENSGALG00000035836 390.00 1651.18 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
97. PKM ENSGALG00000001992 387.00 1638.48 pyruvate kinase M1/2 [Source:NCBI gene;Acc:396456]
98. ATP5G3 383.00 1621.54 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
99. RPL22 ENSGALG00000000719 376.00 1591.90 ribosomal protein L22 [Source:NCBI gene;Acc:373937]
100. SLC25A6_1 ENSGALG00000016691 363.00 1536.87 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA