Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_aorta, section s7.

Sample reads: 235,501. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 5654.00 24010.84
2. RPLP0 ENSGALG00000023294 3060.00 12994.90 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
3. RPL35A ENSGALG00000007611, ENSGALG00000041230 2451.00 10408.66 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
4. gga-mir-3527 gga-mir-3527 2439.00 10357.70
5. gga-mir-3533 ENSGALG00000027736 2432.00 10327.97 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
6. RPS10 ENSGALG00000002813 2425.00 10298.25 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
7. RPS29 ENSGALG00000012229 2308.00 9801.38 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
8. RPL4 ENSGALG00000007711 2105.00 8939.30 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
9. GAPDH ENSGALG00000014442 2061.00 8752.45 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
10. EEF1A EEF1A 2030.00 8620.80
11. RPS15 ENSGALG00000015195 2006.00 8518.88 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
12. MT-ATP6 MT-ATP6 1982.00 8416.96
13. MT-ND1 MT-ND1 1697.00 7206.65
14. RPL13 ENSGALG00000006179 1678.00 7125.96 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
15. MT-ND5 MT-ND5 1644.00 6981.57
16. RPS2 ENSGALG00000005490 1600.00 6794.72 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
17. RPSA 1567.00 6654.58 ribosomal protein SA
18. RPL23A ENSGALG00000003966 1524.00 6471.97 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
19. RPS4 RPS4 1497.00 6357.31
20. RPL15 ENSGALG00000011290 1433.00 6085.52 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
21. RPS8 ENSGALG00000010124 1346.00 5716.06 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
22. RPL35 ENSGALG00000035677 1299.00 5516.46 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
23. RPLP1 ENSGALG00000030878 1289.00 5474.00 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
24. RPS28 ENSGALG00000024398 1243.00 5278.65 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
25. PPIA ENSGALG00000028600 1232.00 5231.93 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
26. RPL32 ENSGALG00000027142 1224.00 5197.96 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
27. RPL24 ENSGALG00000015339 1200.00 5096.04 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
28. MT-ND3 MT-ND3 1182.00 5019.60
29. MT-ND4 MT-ND4 1176.00 4994.12
30. RPS14 ENSGALG00000004588 1141.00 4845.48 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
31. RPL6 ENSGALG00000004818 1129.00 4794.52 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
32. RPL18A 1100.00 4671.37 ribosomal protein L18a
33. RPL19 ENSGALG00000001658 1094.00 4645.89 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
34. RPL27A ENSGALG00000005948 1066.00 4526.98 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
35. RPS21 ENSGALG00000005338 1063.00 4514.24 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
36. RPS11 ENSGALG00000017299 1062.00 4509.99 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
37. RPL7A ENSGALG00000003197 1034.00 4391.09 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
38. RPL29 ENSGALG00000026978 1032.00 4382.59 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
39. RPS15A ENSGALG00000006771 1031.00 4378.35 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
40. RPL12 ENSGALG00000008806 1016.00 4314.65 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
41. RPL27 ENSGALG00000002837 1013.00 4301.91 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
42. RPL36 ENSGALG00000000474 991.00 4208.48 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
43. GNB2L1 ENSGALG00000000122 944.00 4008.88 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
44. SNRPD1 ENSGALG00000041334 926.00 3932.44 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
45. MT-CYB MT-CYB 919.00 3902.72
46. ANP32B ENSGALG00000037483 900.00 3822.03 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
47. RPL7 ENSGALG00000035252 864.00 3669.15 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
48. MDK ENSGALG00000008367 846.00 3592.71 midkine [Source:NCBI gene;Acc:423196]
49. RPL26 RPL26 840.00 3567.23
50. RPS12 ENSGALG00000013990 840.00 3567.23 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
51. RPS27A ENSGALG00000036790 838.00 3558.73 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
52. RPS23 ENSGALG00000015617 829.00 3520.51 ribosomal protein S23
53. RPL38 ENSGALG00000001465 826.00 3507.77 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
54. RPS16 ENSGALG00000026490 800.00 3397.36 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
55. HBZ ENSGALG00000023740 799.00 3393.11 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
56. RPS7 ENSGALG00000016392 799.00 3393.11 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
57. RPL5 ENSGALG00000005922 796.00 3380.37 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
58. RPL14 ENSGALG00000043379 792.00 3363.39 ribosomal protein L14
59. CIRBP ENSGALG00000030918 744.00 3159.54 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
60. RPL8 ENSGALG00000016232 738.00 3134.06 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
61. RPS3A ENSGALG00000010077 737.00 3129.82 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
62. TCEB3 ENSGALG00000034625 733.00 3112.83 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
63. RPL36AL ENSGALG00000004952 728.00 3091.60 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
64. MT-CO1 MT-CO1 710.00 3015.16
65. RPL37A ENSGALG00000011472 698.00 2964.20 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
66. NME2 ENSGALG00000002932 667.00 2832.55 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
67. HBG1 HBG1 665.00 2824.06
68. RPS13 ENSGALG00000006096 654.00 2777.34 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
69. ENO1 ENSGALG00000002377 648.00 2751.86 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
70. RPS25 ENSGALG00000007699 642.00 2726.38 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
71. EIF5A2 ENSGALG00000009309 641.00 2722.13 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
72. LDHB ENSGALG00000035836 634.00 2692.41 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
73. RPS24 ENSGALG00000004871 601.00 2552.27 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
74. ENSGALG00000018384 ENSGALG00000018384 598.00 2539.53
75. RPL21 ENSGALG00000027035 580.00 2463.09 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
76. PRDX1 ENSGALG00000010243 571.00 2424.87 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
77. HMGN2 HMGN2 570.00 2420.62
78. RPL23 ENSGALG00000001634 570.00 2420.62 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
79. RPS17 ENSGALG00000002157 566.00 2403.63 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
80. ALDOC ENSGALG00000026077 532.00 2259.24 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
81. ENSGALG00000028992 ENSGALG00000028992 530.00 2250.75
82. EEF1D 523.00 2221.02 eukaryotic translation elongation factor 1 delta, transcript variant X13
83. RPS3 ENSGALG00000017330 523.00 2221.02 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
84. HBE 518.00 2199.79 hemoglobin subunit epsilon
85. RPS20 ENSGALG00000014432 512.00 2174.31 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
86. UBB ENSGALG00000004509 512.00 2174.31 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
87. STMN1 ENSGALG00000001475 492.00 2089.38 stathmin 1 [Source:NCBI gene;Acc:396057]
88. TMSB4X ENSGALG00000026383 492.00 2089.38 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
89. ATP5G3 490.00 2080.88 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
90. ENSGALG00000028649 ENSGALG00000028649 483.00 2051.16
91. FTH FTH 483.00 2051.16
92. PKM ENSGALG00000001992 481.00 2042.66 pyruvate kinase M1/2 [Source:NCBI gene;Acc:396456]
93. MT-ND6 MT-ND6 475.00 2017.18
94. RPL10A ENSGALG00000002644 467.00 1983.21 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
95. RPS6 ENSGALG00000015082 455.00 1932.25 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
96. RPL31 ENSGALG00000016775 421.00 1787.86 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
97. ENSGALG00000022570 ENSGALG00000022570 413.00 1753.89
98. RAN ENSGALG00000002569 396.00 1681.69 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
99. CRHOA CRHOA 389.00 1651.97
100. DYL1 ENSGALG00000007153 380.00 1613.75 dynein light chain 1 cytoplasmic [Source:NCBI gene;Acc:427708]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA