Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_aorta, section s68.

Sample reads: 235,939. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. HBZ ENSGALG00000023740 8095.00 34311.32 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
2. HBG1 HBG1 7906.00 33510.22
3. HBE 5608.00 23769.96 hemoglobin subunit epsilon
4. MT-CO3 MT-CO3 5422.00 22981.59
5. gga-mir-3533 ENSGALG00000027736 2631.00 11151.71 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
6. RPLP0 ENSGALG00000023294 2590.00 10977.93 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
7. gga-mir-3527 gga-mir-3527 2354.00 9977.62
8. RPL35A ENSGALG00000007611, ENSGALG00000041230 2254.00 9553.76 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
9. RPS10 ENSGALG00000002813 2224.00 9426.60 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
10. EEF1A EEF1A 2222.00 9418.13
11. RPS15 ENSGALG00000015195 2107.00 8930.69 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
12. RPS29 ENSGALG00000012229 2057.00 8718.76 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
13. RPL4 ENSGALG00000007711 1873.00 7938.86 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
14. GAPDH ENSGALG00000014442 1830.00 7756.60 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
15. RPL13 ENSGALG00000006179 1812.00 7680.31 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
16. RPL15 ENSGALG00000011290 1572.00 6663.05 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
17. RPS4 RPS4 1505.00 6379.06
18. PPIA ENSGALG00000028600 1451.00 6150.18 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
19. RPL23A ENSGALG00000003966 1451.00 6150.18 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
20. RPS2 ENSGALG00000005490 1398.00 5925.54 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
21. MT-ATP6 MT-ATP6 1393.00 5904.34
22. RPSA 1304.00 5527.11 ribosomal protein SA
23. MT-ND1 MT-ND1 1292.00 5476.25
24. MT-ND5 MT-ND5 1290.00 5467.77
25. MT-ND3 MT-ND3 1279.00 5421.15
26. RPL35 ENSGALG00000035677 1253.00 5310.94 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
27. RPS8 ENSGALG00000010124 1240.00 5255.84 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
28. RPS14 ENSGALG00000004588 1154.00 4891.32 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
29. RPL19 ENSGALG00000001658 1141.00 4836.22 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
30. RPS28 ENSGALG00000024398 1134.00 4806.55 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
31. RPS15A ENSGALG00000006771 1133.00 4802.31 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
32. RPL32 ENSGALG00000027142 1116.00 4730.26 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
33. RPLP1 ENSGALG00000030878 1094.00 4637.01 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
34. RPL24 ENSGALG00000015339 1090.00 4620.05 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
35. RPS21 ENSGALG00000005338 1072.00 4543.76 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
36. MT-ND4 MT-ND4 1062.00 4501.37
37. RPL6 ENSGALG00000004818 1057.00 4480.18 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
38. RPL7A ENSGALG00000003197 1024.00 4340.31 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
39. RPS11 ENSGALG00000017299 977.00 4141.09 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
40. RPL27A ENSGALG00000005948 975.00 4132.62 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
41. RPL29 ENSGALG00000026978 947.00 4013.94 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
42. RPL18A 929.00 3937.64 ribosomal protein L18a
43. SNRPD1 ENSGALG00000041334 909.00 3852.87 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
44. RPL27 ENSGALG00000002837 908.00 3848.63 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
45. RPL12 ENSGALG00000008806 892.00 3780.81 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
46. RPS23 ENSGALG00000015617 869.00 3683.33 ribosomal protein S23
47. RPL36 ENSGALG00000000474 843.00 3573.12 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
48. GNB2L1 ENSGALG00000000122 804.00 3407.82 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
49. RPS3A ENSGALG00000010077 801.00 3395.10 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
50. MT-CYB MT-CYB 784.00 3323.05
51. ANP32B ENSGALG00000037483 774.00 3280.66 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
52. RPL14 ENSGALG00000043379 769.00 3259.47 ribosomal protein L14
53. RPS12 ENSGALG00000013990 766.00 3246.75 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
54. RPS16 ENSGALG00000026490 755.00 3200.13 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
55. RPL36AL ENSGALG00000004952 739.00 3132.31 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
56. CIRBP ENSGALG00000030918 724.00 3068.73 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
57. RPL7 ENSGALG00000035252 723.00 3064.49 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
58. RPL38 ENSGALG00000001465 712.00 3017.87 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
59. RPS27A ENSGALG00000036790 710.00 3009.39 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
60. RPL8 ENSGALG00000016232 699.00 2962.77 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
61. RPL26 RPL26 687.00 2911.91
62. RPS7 ENSGALG00000016392 686.00 2907.67 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
63. RPL37A ENSGALG00000011472 684.00 2899.19 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
64. TMSB4X ENSGALG00000026383 649.00 2750.84 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
65. RPS13 ENSGALG00000006096 635.00 2691.50 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
66. RPL21 ENSGALG00000027035 631.00 2674.54 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
67. NME2 ENSGALG00000002932 627.00 2657.59 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
68. FTH FTH 622.00 2636.40
69. RPS25 ENSGALG00000007699 608.00 2577.06 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
70. PRDX1 ENSGALG00000010243 603.00 2555.86 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
71. EEF1D 598.00 2534.67 eukaryotic translation elongation factor 1 delta, transcript variant X13
72. TCEB3 ENSGALG00000034625 598.00 2534.67 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
73. RPL5 ENSGALG00000005922 594.00 2517.72 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
74. RPS24 ENSGALG00000004871 588.00 2492.29 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
75. RPS17 ENSGALG00000002157 570.00 2415.99 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
76. ENO1 ENSGALG00000002377 567.00 2403.28 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
77. MT-CO1 MT-CO1 564.00 2390.56
78. MT-ND6 MT-ND6 554.00 2348.17
79. EIF5A2 ENSGALG00000009309 529.00 2242.21 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
80. RPL23 ENSGALG00000001634 529.00 2242.21 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
81. RPS3 ENSGALG00000017330 527.00 2233.73 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
82. LDHB ENSGALG00000035836 518.00 2195.59 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
83. MDK ENSGALG00000008367 503.00 2132.01 midkine [Source:NCBI gene;Acc:423196]
84. UBB ENSGALG00000004509 476.00 2017.56 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
85. HMGN2 HMGN2 475.00 2013.33
86. ALDOC ENSGALG00000026077 463.00 1962.46 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
87. ATP5G3 449.00 1903.12 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
88. STMN1 ENSGALG00000001475 448.00 1898.88 stathmin 1 [Source:NCBI gene;Acc:396057]
89. CRHOA CRHOA 443.00 1877.69
90. ENSGALG00000022570 ENSGALG00000022570 443.00 1877.69
91. RPL10A ENSGALG00000002644 426.00 1805.64 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
92. ENSGALG00000028992 ENSGALG00000028992 412.00 1746.30
93. RPL37 ENSGALG00000014833 390.00 1653.05 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
94. RPL31 ENSGALG00000016775 387.00 1640.33 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
95. ENSGALG00000028649 ENSGALG00000028649 385.00 1631.85
96. SLC25A6_1 ENSGALG00000016691 385.00 1631.85 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
97. MMP15 ENSGALG00000038758 383.00 1623.38 matrix metallopeptidase 15 [Source:HGNC Symbol;Acc:HGNC:7161]
98. RPS20 ENSGALG00000014432 378.00 1602.18 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
99. ZNF593 ENSGALG00000000542 360.00 1525.89 zinc finger protein 593 [Source:NCBI gene;Acc:419549]
100. ENSGALG00000018384 ENSGALG00000018384 347.00 1470.79
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA