Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_aorta, section s67.

Sample reads: 235,571. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. HBZ ENSGALG00000023740 10323.00 43823.42 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
2. HBG1 HBG1 9156.00 38869.24
3. HBE 6016.00 25539.25 hemoglobin subunit epsilon
4. MT-CO3 MT-CO3 5139.00 21816.19
5. RPLP0 ENSGALG00000023294 3253.00 13809.70 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
6. gga-mir-3533 ENSGALG00000027736 2531.00 10744.65 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
7. RPS15 ENSGALG00000015195 2397.00 10175.79 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
8. gga-mir-3527 gga-mir-3527 2314.00 9823.44
9. RPS10 ENSGALG00000002813 2288.00 9713.07 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
10. RPL4 ENSGALG00000007711 2253.00 9564.48 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
11. RPL35A ENSGALG00000007611, ENSGALG00000041230 2234.00 9483.82 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
12. RPS29 ENSGALG00000012229 2058.00 8736.66 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
13. RPL13 ENSGALG00000006179 1883.00 7993.75 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
14. GAPDH ENSGALG00000014442 1775.00 7535.27 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
15. RPS2 ENSGALG00000005490 1759.00 7467.34 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
16. MT-ATP6 MT-ATP6 1647.00 6991.88
17. RPL15 ENSGALG00000011290 1591.00 6754.15 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
18. RPL23A ENSGALG00000003966 1539.00 6533.40 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
19. EEF1A EEF1A 1454.00 6172.55
20. RPS4 RPS4 1394.00 5917.84
21. MT-ND5 MT-ND5 1338.00 5680.11
22. RPSA 1308.00 5552.75 ribosomal protein SA
23. RPL35 ENSGALG00000035677 1289.00 5472.09 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
24. RPL6 ENSGALG00000004818 1288.00 5467.84 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
25. MT-ND1 MT-ND1 1279.00 5429.64
26. MT-ND3 MT-ND3 1248.00 5298.04
27. PPIA ENSGALG00000028600 1230.00 5221.62 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
28. RPS15A ENSGALG00000006771 1200.00 5094.27 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
29. RPS8 ENSGALG00000010124 1196.00 5077.28 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
30. RPS14 ENSGALG00000004588 1161.00 4928.70 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
31. RPL24 ENSGALG00000015339 1150.00 4882.00 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
32. RPL19 ENSGALG00000001658 1123.00 4767.38 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
33. RPS28 ENSGALG00000024398 1116.00 4737.67 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
34. RPL27 ENSGALG00000002837 1094.00 4644.27 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
35. RPS21 ENSGALG00000005338 1093.00 4640.03 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
36. RPL32 ENSGALG00000027142 1090.00 4627.29 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
37. RPL36 ENSGALG00000000474 1064.00 4516.92 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
38. RPL29 ENSGALG00000026978 1042.00 4423.52 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
39. RPS11 ENSGALG00000017299 1040.00 4415.03 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
40. RPLP1 ENSGALG00000030878 1034.00 4389.56 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
41. RPL7A ENSGALG00000003197 1029.00 4368.33 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
42. RPS23 ENSGALG00000015617 992.00 4211.26 ribosomal protein S23
43. RPS12 ENSGALG00000013990 984.00 4177.30 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
44. RPL27A ENSGALG00000005948 979.00 4156.07 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
45. SNRPD1 ENSGALG00000041334 915.00 3884.38 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
46. RPL18A 884.00 3752.78 ribosomal protein L18a
47. MT-ND4 MT-ND4 859.00 3646.64
48. GNB2L1 ENSGALG00000000122 846.00 3591.46 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
49. RPS3A ENSGALG00000010077 838.00 3557.50 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
50. RPL14 ENSGALG00000043379 808.00 3430.14 ribosomal protein L14
51. RPL36AL ENSGALG00000004952 801.00 3400.42 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
52. RPL7 ENSGALG00000035252 784.00 3328.25 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
53. RPL12 ENSGALG00000008806 774.00 3285.80 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
54. RPL21 ENSGALG00000027035 774.00 3285.80 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
55. RPS16 ENSGALG00000026490 771.00 3273.07 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
56. RPL8 ENSGALG00000016232 766.00 3251.84 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
57. MT-CYB MT-CYB 762.00 3234.86
58. RPS7 ENSGALG00000016392 739.00 3137.22 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
59. CIRBP ENSGALG00000030918 725.00 3077.79 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
60. RPS27A ENSGALG00000036790 714.00 3031.09 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
61. RPL5 ENSGALG00000005922 712.00 3022.60 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
62. RPL38 ENSGALG00000001465 706.00 2997.13 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
63. RPL37A ENSGALG00000011472 697.00 2958.92 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
64. RPL26 RPL26 692.00 2937.69
65. TMSB4X ENSGALG00000026383 673.00 2857.03 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
66. ANP32B ENSGALG00000037483 663.00 2814.58 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
67. RPS13 ENSGALG00000006096 650.00 2759.39 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
68. FTH FTH 642.00 2725.43
69. RPS24 ENSGALG00000004871 613.00 2602.32 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
70. NME2 ENSGALG00000002932 603.00 2559.87 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
71. TCEB3 ENSGALG00000034625 598.00 2538.64 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
72. RPS17 ENSGALG00000002157 591.00 2508.93 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
73. MDK ENSGALG00000008367 573.00 2432.51 midkine [Source:NCBI gene;Acc:423196]
74. PRDX1 ENSGALG00000010243 566.00 2402.80 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
75. RPS25 ENSGALG00000007699 564.00 2394.30 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
76. RPS3 ENSGALG00000017330 564.00 2394.30 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
77. RPL23 ENSGALG00000001634 561.00 2381.57 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
78. EEF1D 552.00 2343.36 eukaryotic translation elongation factor 1 delta, transcript variant X13
79. MT-ND6 MT-ND6 523.00 2220.25
80. MT-CO1 MT-CO1 517.00 2194.78
81. UBB ENSGALG00000004509 503.00 2135.35 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
82. ALDOC ENSGALG00000026077 500.00 2122.61 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
83. ENO1 ENSGALG00000002377 487.00 2067.42 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
84. EIF5A2 ENSGALG00000009309 486.00 2063.18 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
85. RPL37 ENSGALG00000014833 484.00 2054.69 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
86. ENSGALG00000028992 ENSGALG00000028992 482.00 2046.20
87. RPL10A ENSGALG00000002644 475.00 2016.48 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
88. MMP15 ENSGALG00000038758 452.00 1918.84 matrix metallopeptidase 15 [Source:HGNC Symbol;Acc:HGNC:7161]
89. HMGN2 HMGN2 447.00 1897.61
90. ATP5G3 433.00 1838.18 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
91. LDHB ENSGALG00000035836 427.00 1812.71 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
92. STMN1 ENSGALG00000001475 427.00 1812.71 stathmin 1 [Source:NCBI gene;Acc:396057]
93. CRHOA CRHOA 401.00 1702.33
94. RPL31 ENSGALG00000016775 393.00 1668.37 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
95. RPS20 ENSGALG00000014432 385.00 1634.41 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
96. ZNF593 ENSGALG00000000542 383.00 1625.92 zinc finger protein 593 [Source:NCBI gene;Acc:419549]
97. DYL1 ENSGALG00000007153 366.00 1553.75 dynein light chain 1 cytoplasmic [Source:NCBI gene;Acc:427708]
98. ENSGALG00000022570 ENSGALG00000022570 366.00 1553.75
99. RPS6 ENSGALG00000015082 351.00 1490.07 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
100. SLC25A6_1 ENSGALG00000016691 350.00 1485.83 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA