Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_aorta, section s61.

Sample reads: 234,557. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. HBG1 HBG1 8807.00 37551.22
2. HBZ ENSGALG00000023740 7781.00 33176.57 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
3. MT-CO3 MT-CO3 5491.00 23412.48
4. HBE 4837.00 20623.96 hemoglobin subunit epsilon
5. RPLP0 ENSGALG00000023294 2922.00 12458.80 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
6. gga-mir-3533 ENSGALG00000027736 2641.00 11260.68 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
7. gga-mir-3527 gga-mir-3527 2374.00 10122.24
8. RPS15 ENSGALG00000015195 2202.00 9388.87 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
9. RPL35A ENSGALG00000007611, ENSGALG00000041230 2154.00 9184.21 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
10. RPS10 ENSGALG00000002813 2116.00 9022.18 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
11. RPS29 ENSGALG00000012229 2114.00 9013.66 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
12. RPL4 ENSGALG00000007711 1928.00 8220.59 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
13. MT-ATP6 MT-ATP6 1902.00 8109.73
14. GAPDH ENSGALG00000014442 1808.00 7708.94 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
15. EEF1A EEF1A 1791.00 7636.45
16. RPL13 ENSGALG00000006179 1759.00 7500.01 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
17. RPL15 ENSGALG00000011290 1653.00 7048.05 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
18. RPS2 ENSGALG00000005490 1476.00 6293.36 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
19. MT-ND5 MT-ND5 1423.00 6067.38
20. RPL23A ENSGALG00000003966 1403.00 5982.10 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
21. RPS4 RPS4 1384.00 5901.09
22. RPSA 1337.00 5700.69 ribosomal protein SA
23. RPL35 ENSGALG00000035677 1308.00 5577.04 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
24. MT-ND1 MT-ND1 1303.00 5555.72
25. PPIA ENSGALG00000028600 1290.00 5500.29 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
26. RPS8 ENSGALG00000010124 1248.00 5321.21 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
27. RPL6 ENSGALG00000004818 1206.00 5142.13 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
28. RPS15A ENSGALG00000006771 1182.00 5039.80 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
29. RPLP1 ENSGALG00000030878 1174.00 5005.69 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
30. RPL32 ENSGALG00000027142 1149.00 4899.10 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
31. RPL19 ENSGALG00000001658 1136.00 4843.67 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
32. RPS28 ENSGALG00000024398 1136.00 4843.67 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
33. MT-ND3 MT-ND3 1083.00 4617.69
34. RPS21 ENSGALG00000005338 1062.00 4528.15 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
35. RPS14 ENSGALG00000004588 1050.00 4476.98 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
36. RPL24 ENSGALG00000015339 1047.00 4464.19 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
37. MT-ND4 MT-ND4 1010.00 4306.43
38. RPL27A ENSGALG00000005948 1005.00 4285.11 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
39. RPL7A ENSGALG00000003197 1001.00 4268.06 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
40. RPL29 ENSGALG00000026978 981.00 4182.78 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
41. RPL18A 960.00 4093.24 ribosomal protein L18a
42. RPS12 ENSGALG00000013990 930.00 3965.33 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
43. SNRPD1 ENSGALG00000041334 922.00 3931.22 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
44. RPS11 ENSGALG00000017299 918.00 3914.16 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
45. RPL12 ENSGALG00000008806 898.00 3828.89 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
46. RPS23 ENSGALG00000015617 885.00 3773.46 ribosomal protein S23
47. MT-CYB MT-CYB 872.00 3718.03
48. RPL36 ENSGALG00000000474 860.00 3666.86 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
49. GNB2L1 ENSGALG00000000122 853.00 3637.01 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
50. RPL27 ENSGALG00000002837 851.00 3628.49 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
51. RPL36AL ENSGALG00000004952 812.00 3462.20 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
52. RPS3A ENSGALG00000010077 792.00 3376.92 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
53. RPL38 ENSGALG00000001465 767.00 3270.33 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
54. CIRBP ENSGALG00000030918 755.00 3219.16 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
55. RPS16 ENSGALG00000026490 747.00 3185.05 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
56. RPL26 RPL26 746.00 3180.79
57. ANP32B ENSGALG00000037483 739.00 3150.94 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
58. RPL7 ENSGALG00000035252 723.00 3082.72 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
59. RPL21 ENSGALG00000027035 717.00 3057.14 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
60. RPS27A ENSGALG00000036790 711.00 3031.56 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
61. RPL14 ENSGALG00000043379 702.00 2993.18 ribosomal protein L14
62. RPL37A ENSGALG00000011472 693.00 2954.81 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
63. RPL5 ENSGALG00000005922 674.00 2873.80 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
64. RPS7 ENSGALG00000016392 663.00 2826.89 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
65. RPL8 ENSGALG00000016232 646.00 2754.41 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
66. RPS13 ENSGALG00000006096 644.00 2745.88 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
67. PRDX1 ENSGALG00000010243 616.00 2626.50 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
68. NME2 ENSGALG00000002932 612.00 2609.44 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
69. FTH FTH 607.00 2588.12
70. TCEB3 ENSGALG00000034625 593.00 2528.43 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
71. TMSB4X ENSGALG00000026383 593.00 2528.43 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
72. MDK ENSGALG00000008367 586.00 2498.58 midkine [Source:NCBI gene;Acc:423196]
73. RPS17 ENSGALG00000002157 582.00 2481.53 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
74. RPS25 ENSGALG00000007699 582.00 2481.53 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
75. MT-CO1 MT-CO1 572.00 2438.89
76. EIF5A2 ENSGALG00000009309 543.00 2315.24 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
77. RPL23 ENSGALG00000001634 538.00 2293.92 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
78. MT-ND6 MT-ND6 534.00 2276.87
79. RPS24 ENSGALG00000004871 530.00 2259.81 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
80. EEF1D 529.00 2255.55 eukaryotic translation elongation factor 1 delta, transcript variant X13
81. ENO1 ENSGALG00000002377 517.00 2204.38 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
82. RPS3 ENSGALG00000017330 516.00 2200.12 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
83. ALDOC ENSGALG00000026077 512.00 2183.06 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
84. ENSGALG00000028992 ENSGALG00000028992 492.00 2097.79
85. UBB ENSGALG00000004509 492.00 2097.79 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
86. HMGN2 HMGN2 490.00 2089.26
87. LDHB ENSGALG00000035836 470.00 2003.98 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
88. RPS20 ENSGALG00000014432 454.00 1935.76 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
89. STMN1 ENSGALG00000001475 454.00 1935.76 stathmin 1 [Source:NCBI gene;Acc:396057]
90. RPL10A ENSGALG00000002644 441.00 1880.33 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
91. ENSGALG00000028649 ENSGALG00000028649 421.00 1795.06
92. RPS6 ENSGALG00000015082 421.00 1795.06 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
93. ATP5G3 398.00 1696.99 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
94. ENSGALG00000022570 ENSGALG00000022570 390.00 1662.88
95. CRHOA CRHOA 389.00 1658.62
96. MMP15 ENSGALG00000038758 383.00 1633.03 matrix metallopeptidase 15 [Source:HGNC Symbol;Acc:HGNC:7161]
97. RPL37 ENSGALG00000014833 382.00 1628.77 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
98. PKM ENSGALG00000001992 368.00 1569.08 pyruvate kinase M1/2 [Source:NCBI gene;Acc:396456]
99. ATP5L ENSGALG00000006899 350.00 1492.33 ATP synthase, H+ transporting, mitochondrial Fo complex subunit G
100. SLC25A6_1 ENSGALG00000016691 350.00 1492.33 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA