Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_aorta, section s6.

Sample reads: 235,657. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 6780.00 28772.58
2. RPLP0 ENSGALG00000023294 3295.00 13983.14 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
3. RPS10 ENSGALG00000002813 2425.00 10291.08 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
4. RPL35A ENSGALG00000007611, ENSGALG00000041230 2388.00 10134.06 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
5. RPS15 ENSGALG00000015195 2310.00 9803.05 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
6. GAPDH ENSGALG00000014442 2164.00 9183.46 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
7. RPL4 ENSGALG00000007711 2128.00 9030.69 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
8. EEF1A EEF1A 2095.00 8890.64
9. gga-mir-3533 ENSGALG00000027736 2020.00 8572.36 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
10. RPS29 ENSGALG00000012229 2019.00 8568.12 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
11. gga-mir-3527 gga-mir-3527 1812.00 7689.66
12. RPL13 ENSGALG00000006179 1792.00 7604.79 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
13. RPS2 ENSGALG00000005490 1792.00 7604.79 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
14. MT-ATP6 MT-ATP6 1678.00 7121.00
15. RPS4 RPS4 1627.00 6904.57
16. RPS8 ENSGALG00000010124 1601.00 6794.23 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
17. RPL23A ENSGALG00000003966 1597.00 6777.26 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
18. RPS28 ENSGALG00000024398 1523.00 6463.22 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
19. RPL15 ENSGALG00000011290 1484.00 6297.72 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
20. RPS14 ENSGALG00000004588 1396.00 5924.27 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
21. RPL27A ENSGALG00000005948 1394.00 5915.78 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
22. RPSA 1344.00 5703.59 ribosomal protein SA
23. RPL35 ENSGALG00000035677 1322.00 5610.23 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
24. RPL19 ENSGALG00000001658 1306.00 5542.33 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
25. RPLP1 ENSGALG00000030878 1246.00 5287.70 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
26. PPIA ENSGALG00000028600 1216.00 5160.39 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
27. RPL6 ENSGALG00000004818 1207.00 5122.20 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
28. RPL24 ENSGALG00000015339 1196.00 5075.52 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
29. RPS15A ENSGALG00000006771 1189.00 5045.81 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
30. MT-ND5 MT-ND5 1157.00 4910.01
31. MT-ND1 MT-ND1 1140.00 4837.87
32. RPL7A ENSGALG00000003197 1139.00 4833.62 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
33. RPL36 ENSGALG00000000474 1116.00 4736.02 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
34. RPL26 RPL26 1097.00 4655.39
35. RPL32 ENSGALG00000027142 1084.00 4600.22 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
36. SNRPD1 ENSGALG00000041334 1078.00 4574.76 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
37. RPL18A 1040.00 4413.49 ribosomal protein L18a
38. MT-ND3 MT-ND3 1019.00 4324.37
39. RPS21 ENSGALG00000005338 1016.00 4311.64 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
40. RPL29 ENSGALG00000026978 1007.00 4273.45 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
41. RPL12 ENSGALG00000008806 1000.00 4243.74 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
42. RPS7 ENSGALG00000016392 969.00 4112.19 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
43. RPL38 ENSGALG00000001465 967.00 4103.70 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
44. RPS16 ENSGALG00000026490 950.00 4031.56 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
45. RPS12 ENSGALG00000013990 949.00 4027.31 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
46. RPL27 ENSGALG00000002837 922.00 3912.73 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
47. MDK ENSGALG00000008367 915.00 3883.03 midkine [Source:NCBI gene;Acc:423196]
48. HBZ ENSGALG00000023740 911.00 3866.05 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
49. RPS3A ENSGALG00000010077 891.00 3781.18 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
50. RPL7 ENSGALG00000035252 883.00 3747.23 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
51. RPL8 ENSGALG00000016232 881.00 3738.74 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
52. RPS23 ENSGALG00000015617 875.00 3713.28 ribosomal protein S23
53. RPL36AL ENSGALG00000004952 869.00 3687.81 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
54. RPS27A ENSGALG00000036790 860.00 3649.62 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
55. MT-ND4 MT-ND4 848.00 3598.69
56. MT-ND6 MT-ND6 824.00 3496.84
57. RPL14 ENSGALG00000043379 812.00 3445.92 ribosomal protein L14
58. RPL21 ENSGALG00000027035 803.00 3407.73 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
59. RPL10A ENSGALG00000002644 777.00 3297.39 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
60. ANP32B ENSGALG00000037483 762.00 3233.73 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
61. HBG1 HBG1 762.00 3233.73
62. RPL37A ENSGALG00000011472 749.00 3178.56 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
63. CIRBP ENSGALG00000030918 739.00 3136.13 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
64. RPS11 ENSGALG00000017299 737.00 3127.64 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
65. RPL5 ENSGALG00000005922 736.00 3123.40 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
66. NME2 ENSGALG00000002932 726.00 3080.96 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
67. RPS25 ENSGALG00000007699 718.00 3047.01 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
68. GNB2L1 ENSGALG00000000122 676.00 2868.77 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
69. RPS6 ENSGALG00000015082 659.00 2796.63 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
70. ENO1 ENSGALG00000002377 643.00 2728.73 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
71. ENSGALG00000028992 ENSGALG00000028992 639.00 2711.75
72. LDHB ENSGALG00000035836 628.00 2665.07 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
73. TCEB3 ENSGALG00000034625 626.00 2656.58 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
74. RPS24 ENSGALG00000004871 622.00 2639.61 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
75. RPL23 ENSGALG00000001634 621.00 2635.36 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
76. EIF5A2 ENSGALG00000009309 609.00 2584.44 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
77. ENSGALG00000018384 ENSGALG00000018384 603.00 2558.98
78. PRDX1 ENSGALG00000010243 597.00 2533.51 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
79. RPS3 ENSGALG00000017330 585.00 2482.59 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
80. UBB ENSGALG00000004509 581.00 2465.62 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
81. RPS13 ENSGALG00000006096 579.00 2457.13 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
82. MT-CYB MT-CYB 577.00 2448.64
83. HMGN5 ENSGALG00000007131 560.00 2376.50 high mobility group nucleosome binding domain 5, transcript variant X1
84. HMGN2 HMGN2 555.00 2355.28
85. STMN1 ENSGALG00000001475 549.00 2329.82 stathmin 1 [Source:NCBI gene;Acc:396057]
86. PKM ENSGALG00000001992 539.00 2287.38 pyruvate kinase M1/2 [Source:NCBI gene;Acc:396456]
87. RPS20 ENSGALG00000014432 539.00 2287.38 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
88. RPS17 ENSGALG00000002157 533.00 2261.92 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
89. MT-CO1 MT-CO1 528.00 2240.70
90. EEF1D 503.00 2134.60 eukaryotic translation elongation factor 1 delta, transcript variant X13
91. TMSB4X ENSGALG00000026383 483.00 2049.73 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
92. ALDOC ENSGALG00000026077 466.00 1977.58 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
93. ENSGALG00000028649 ENSGALG00000028649 457.00 1939.39
94. RPL37 ENSGALG00000014833 446.00 1892.71 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
95. HBE 444.00 1884.22 hemoglobin subunit epsilon
96. RAN ENSGALG00000002569 437.00 1854.52 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
97. RPL22 ENSGALG00000000719 428.00 1816.32 ribosomal protein L22 [Source:NCBI gene;Acc:373937]
98. FTH FTH 422.00 1790.86
99. ATP5G3 412.00 1748.42 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
100. CHCHD2 ENSGALG00000002495 409.00 1735.69 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:NCBI gene;Acc:417544]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA