Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_aorta, section s56.

Sample reads: 235,713. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. HBZ ENSGALG00000023740 8204.00 34809.17 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
2. HBG1 HBG1 7691.00 32632.54
3. MT-CO3 MT-CO3 6112.00 25932.92
4. HBE 5843.00 24791.57 hemoglobin subunit epsilon
5. RPLP0 ENSGALG00000023294 2778.00 11786.92 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
6. RPS10 ENSGALG00000002813 2431.00 10314.61 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
7. EEF1A EEF1A 2398.00 10174.60
8. RPL35A ENSGALG00000007611, ENSGALG00000041230 2257.00 9576.34 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
9. gga-mir-3533 ENSGALG00000027736 2241.00 9508.45 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
10. RPS29 ENSGALG00000012229 2169.00 9202.96 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
11. gga-mir-3527 gga-mir-3527 2032.00 8621.68
12. RPS15 ENSGALG00000015195 1994.00 8460.45 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
13. MT-ATP6 MT-ATP6 1759.00 7463.35
14. RPL4 ENSGALG00000007711 1730.00 7340.31 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
15. GAPDH ENSGALG00000014442 1624.00 6890.55 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
16. RPS4 RPS4 1546.00 6559.60
17. RPL23A ENSGALG00000003966 1506.00 6389.88 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
18. RPS2 ENSGALG00000005490 1504.00 6381.40 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
19. RPL13 ENSGALG00000006179 1500.00 6364.43 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
20. RPL15 ENSGALG00000011290 1495.00 6343.21 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
21. MT-ND5 MT-ND5 1414.00 5999.53
22. MT-ND1 MT-ND1 1413.00 5995.29
23. MT-ND3 MT-ND3 1398.00 5931.65
24. RPSA 1331.00 5647.37 ribosomal protein SA
25. PPIA ENSGALG00000028600 1315.00 5579.48 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
26. RPS8 ENSGALG00000010124 1307.00 5545.54 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
27. RPLP1 ENSGALG00000030878 1224.00 5193.37 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
28. RPL24 ENSGALG00000015339 1181.00 5010.93 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
29. RPS14 ENSGALG00000004588 1180.00 5006.68 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
30. RPS28 ENSGALG00000024398 1173.00 4976.98 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
31. RPL35 ENSGALG00000035677 1152.00 4887.88 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
32. MT-ND4 MT-ND4 1129.00 4790.29
33. RPS21 ENSGALG00000005338 1121.00 4756.35 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
34. RPL19 ENSGALG00000001658 1113.00 4722.40 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
35. RPL32 ENSGALG00000027142 1086.00 4607.85 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
36. RPL27A ENSGALG00000005948 1021.00 4332.05 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
37. RPS15A ENSGALG00000006771 1018.00 4319.32 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
38. RPL7A ENSGALG00000003197 1013.00 4298.11 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
39. RPL18A 986.00 4183.55 ribosomal protein L18a
40. RPL29 ENSGALG00000026978 980.00 4158.09 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
41. RPS11 ENSGALG00000017299 961.00 4077.48 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
42. RPL12 ENSGALG00000008806 958.00 4064.75 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
43. RPL6 ENSGALG00000004818 895.00 3797.44 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
44. RPL27 ENSGALG00000002837 894.00 3793.20 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
45. MT-CYB MT-CYB 839.00 3559.84
46. RPL38 ENSGALG00000001465 832.00 3530.14 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
47. RPL36 ENSGALG00000000474 830.00 3521.65 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
48. RPL26 RPL26 804.00 3411.33
49. RPS23 ENSGALG00000015617 799.00 3390.12 ribosomal protein S23
50. RPS7 ENSGALG00000016392 799.00 3390.12 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
51. GNB2L1 ENSGALG00000000122 793.00 3364.66 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
52. RPS16 ENSGALG00000026490 792.00 3360.42 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
53. RPL7 ENSGALG00000035252 775.00 3288.29 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
54. RPL8 ENSGALG00000016232 762.00 3233.13 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
55. RPS27A ENSGALG00000036790 757.00 3211.91 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
56. RPL14 ENSGALG00000043379 742.00 3148.27 ribosomal protein L14
57. SNRPD1 ENSGALG00000041334 740.00 3139.78 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
58. MT-ND6 MT-ND6 710.00 3012.50
59. NME2 ENSGALG00000002932 704.00 2987.04 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
60. RPS12 ENSGALG00000013990 701.00 2974.31 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
61. FTH FTH 693.00 2940.37
62. ANP32B ENSGALG00000037483 683.00 2897.94 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
63. RPL37A ENSGALG00000011472 682.00 2893.69 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
64. RPL5 ENSGALG00000005922 665.00 2821.56 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
65. RPS3A ENSGALG00000010077 630.00 2673.06 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
66. TCEB3 ENSGALG00000034625 625.00 2651.84 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
67. RPL21 ENSGALG00000027035 622.00 2639.12 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
68. RPL36AL ENSGALG00000004952 612.00 2596.69 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
69. MDK ENSGALG00000008367 611.00 2592.44 midkine [Source:NCBI gene;Acc:423196]
70. CIRBP ENSGALG00000030918 602.00 2554.26 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
71. MT-CO1 MT-CO1 600.00 2545.77
72. RPS25 ENSGALG00000007699 595.00 2524.56 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
73. RPS13 ENSGALG00000006096 593.00 2516.07 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
74. RPS17 ENSGALG00000002157 584.00 2477.88 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
75. RPS24 ENSGALG00000004871 579.00 2456.67 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
76. RPL23 ENSGALG00000001634 561.00 2380.30 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
77. RPL10A ENSGALG00000002644 554.00 2350.60 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
78. UBB ENSGALG00000004509 549.00 2329.38 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
79. ENSGALG00000028992 ENSGALG00000028992 536.00 2274.22
80. ENO1 ENSGALG00000002377 535.00 2269.98 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
81. PRDX1 ENSGALG00000010243 534.00 2265.74 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
82. RPS3 ENSGALG00000017330 529.00 2244.52 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
83. EEF1D 513.00 2176.63 eukaryotic translation elongation factor 1 delta, transcript variant X13
84. TMSB4X ENSGALG00000026383 500.00 2121.48 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
85. RPS6 ENSGALG00000015082 478.00 2028.13 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
86. RPS20 ENSGALG00000014432 453.00 1922.06 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
87. EIF5A2 ENSGALG00000009309 448.00 1900.84 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
88. STMN1 ENSGALG00000001475 442.00 1875.38 stathmin 1 [Source:NCBI gene;Acc:396057]
89. ENSGALG00000028649 ENSGALG00000028649 440.00 1866.90
90. ATP5G3 431.00 1828.71 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
91. ENSGALG00000022570 ENSGALG00000022570 428.00 1815.98
92. HMGN2 HMGN2 428.00 1815.98
93. LDHB ENSGALG00000035836 418.00 1773.55 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
94. RPL37 ENSGALG00000014833 409.00 1735.37 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
95. ALDOC ENSGALG00000026077 384.00 1629.29 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
96. CRHOA CRHOA 375.00 1591.11
97. SLC25A6_1 ENSGALG00000016691 374.00 1586.86 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
98. RAN ENSGALG00000002569 358.00 1518.98 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
99. RPL31 ENSGALG00000016775 354.00 1502.00 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
100. ZNF593 ENSGALG00000000542 352.00 1493.52 zinc finger protein 593 [Source:NCBI gene;Acc:419549]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA