Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_aorta, section s55.

Sample reads: 235,226. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. HBZ ENSGALG00000023740 7397.00 31449.30 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
2. HBG1 HBG1 7107.00 30216.32
3. MT-CO3 MT-CO3 6183.00 26287.82
4. HBE 4673.00 19867.86 hemoglobin subunit epsilon
5. RPLP0 ENSGALG00000023294 2944.00 12516.79 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
6. gga-mir-3533 ENSGALG00000027736 2607.00 11084.00 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
7. gga-mir-3527 gga-mir-3527 2474.00 10518.53
8. RPS10 ENSGALG00000002813 2231.00 9485.38 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
9. RPS29 ENSGALG00000012229 2220.00 9438.61 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
10. MT-ATP6 MT-ATP6 2132.00 9064.47
11. RPS15 ENSGALG00000015195 1886.00 8018.57 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
12. MT-ND5 MT-ND5 1799.00 7648.68
13. RPL35A ENSGALG00000007611, ENSGALG00000041230 1797.00 7640.18 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
14. RPL4 ENSGALG00000007711 1789.00 7606.16 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
15. EEF1A EEF1A 1704.00 7244.77
16. MT-ND1 MT-ND1 1649.00 7010.94
17. GAPDH ENSGALG00000014442 1509.00 6415.71 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
18. RPS8 ENSGALG00000010124 1482.00 6300.91 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
19. RPL13 ENSGALG00000006179 1466.00 6232.89 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
20. RPS2 ENSGALG00000005490 1447.00 6152.11 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
21. RPSA 1411.00 5999.05 ribosomal protein SA
22. RPL23A ENSGALG00000003966 1397.00 5939.52 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
23. PPIA ENSGALG00000028600 1329.00 5650.41 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
24. RPS4 RPS4 1322.00 5620.65
25. MT-ND3 MT-ND3 1294.00 5501.61
26. RPL15 ENSGALG00000011290 1269.00 5395.32 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
27. RPLP1 ENSGALG00000030878 1242.00 5280.52 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
28. RPL19 ENSGALG00000001658 1204.00 5118.96 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
29. RPS21 ENSGALG00000005338 1103.00 4689.55 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
30. RPS28 ENSGALG00000024398 1095.00 4655.53 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
31. MT-ND4 MT-ND4 1094.00 4651.28
32. RPS14 ENSGALG00000004588 1084.00 4608.77 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
33. RPL24 ENSGALG00000015339 1078.00 4583.26 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
34. RPL36 ENSGALG00000000474 1034.00 4396.18 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
35. RPL35 ENSGALG00000035677 1005.00 4272.89 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
36. RPL27A ENSGALG00000005948 967.00 4111.32 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
37. RPS11 ENSGALG00000017299 962.00 4090.07 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
38. ENSGALG00000018384 ENSGALG00000018384 957.00 4068.81
39. RPL7A ENSGALG00000003197 957.00 4068.81 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
40. RPL12 ENSGALG00000008806 953.00 4051.80 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
41. RPL27 ENSGALG00000002837 932.00 3962.52 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
42. MT-CYB MT-CYB 928.00 3945.51
43. RPL29 ENSGALG00000026978 927.00 3941.26 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
44. RPL6 ENSGALG00000004818 904.00 3843.47 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
45. RPL18A 871.00 3703.17 ribosomal protein L18a
46. SNRPD1 ENSGALG00000041334 871.00 3703.17 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
47. RPL32 ENSGALG00000027142 869.00 3694.67 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
48. RPS15A ENSGALG00000006771 846.00 3596.88 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
49. RPL26 RPL26 841.00 3575.62
50. RPL8 ENSGALG00000016232 813.00 3456.57 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
51. RPL38 ENSGALG00000001465 785.00 3337.53 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
52. GNB2L1 ENSGALG00000000122 779.00 3312.02 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
53. RPS12 ENSGALG00000013990 773.00 3286.51 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
54. RPS27A ENSGALG00000036790 757.00 3218.48 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
55. RPS7 ENSGALG00000016392 757.00 3218.48 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
56. MT-ND6 MT-ND6 747.00 3175.97
57. RPS16 ENSGALG00000026490 745.00 3167.46 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
58. RPS23 ENSGALG00000015617 735.00 3124.95 ribosomal protein S23
59. RPS3A ENSGALG00000010077 729.00 3099.44 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
60. MDK ENSGALG00000008367 726.00 3086.68 midkine [Source:NCBI gene;Acc:423196]
61. RPL21 ENSGALG00000027035 715.00 3039.91 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
62. RPL7 ENSGALG00000035252 700.00 2976.14 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
63. ANP32B ENSGALG00000037483 687.00 2920.87 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
64. FTH FTH 671.00 2852.84
65. RPL14 ENSGALG00000043379 648.00 2755.06 ribosomal protein L14
66. RPL5 ENSGALG00000005922 644.00 2738.05 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
67. MT-CO1 MT-CO1 628.00 2670.02
68. RPL10A ENSGALG00000002644 613.00 2606.25 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
69. NME2 ENSGALG00000002932 608.00 2584.99 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
70. CIRBP ENSGALG00000030918 603.00 2563.73 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
71. RPS17 ENSGALG00000002157 596.00 2533.97 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
72. RPL36AL ENSGALG00000004952 592.00 2516.96 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
73. RPS25 ENSGALG00000007699 584.00 2482.95 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
74. TCEB3 ENSGALG00000034625 555.00 2359.65 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
75. TMSB4X ENSGALG00000026383 549.00 2334.14 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
76. UBB ENSGALG00000004509 533.00 2266.12 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
77. RPS24 ENSGALG00000004871 530.00 2253.36 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
78. ENO1 ENSGALG00000002377 529.00 2249.11 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
79. RPL23 ENSGALG00000001634 524.00 2227.85 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
80. RPL37A ENSGALG00000011472 524.00 2227.85 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
81. RPS13 ENSGALG00000006096 520.00 2210.85 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
82. PRDX1 ENSGALG00000010243 519.00 2206.60 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
83. RPS6 ENSGALG00000015082 509.00 2164.08 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
84. ENSGALG00000028992 ENSGALG00000028992 508.00 2159.83
85. ALDOC ENSGALG00000026077 505.00 2147.07 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
86. RPS3 ENSGALG00000017330 503.00 2138.57 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
87. EEF1D 488.00 2074.79 eukaryotic translation elongation factor 1 delta, transcript variant X13
88. ATP5G3 476.00 2023.78 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
89. HMGN2 HMGN2 459.00 1951.50
90. RPS20 ENSGALG00000014432 458.00 1947.25 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
91. EIF5A2 ENSGALG00000009309 442.00 1879.22 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
92. STMN1 ENSGALG00000001475 421.00 1789.94 stathmin 1 [Source:NCBI gene;Acc:396057]
93. CRHOA CRHOA 413.00 1755.92
94. LDHB ENSGALG00000035836 411.00 1747.42 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
95. RPL37 ENSGALG00000014833 407.00 1730.41 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
96. ENSGALG00000022570 ENSGALG00000022570 404.00 1717.66
97. ENSGALG00000028649 ENSGALG00000028649 404.00 1717.66
98. RPL31 ENSGALG00000016775 398.00 1692.15 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
99. MT-ND2 MT-ND2 372.00 1581.61
100. SLC25A6_1 ENSGALG00000016691 367.00 1560.35 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA