Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_aorta, section s54.

Sample reads: 235,937. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. HBZ ENSGALG00000023740 9490.00 40228.74 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
2. HBG1 HBG1 8261.00 35018.93
3. HBE 5404.00 22907.91 hemoglobin subunit epsilon
4. MT-CO3 MT-CO3 5226.00 22153.36
5. RPLP0 ENSGALG00000023294 3077.00 13043.61 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
6. gga-mir-3533 ENSGALG00000027736 2575.00 10915.60 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
7. RPL35A ENSGALG00000007611, ENSGALG00000041230 2110.00 8944.43 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
8. EEF1A EEF1A 2092.00 8868.13
9. RPS10 ENSGALG00000002813 2059.00 8728.24 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
10. RPS15 ENSGALG00000015195 1968.00 8342.48 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
11. RPS29 ENSGALG00000012229 1967.00 8338.24 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
12. RPL4 ENSGALG00000007711 1945.00 8244.98 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
13. GAPDH ENSGALG00000014442 1788.00 7579.45 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
14. gga-mir-3527 gga-mir-3527 1775.00 7524.34
15. RPS2 ENSGALG00000005490 1647.00 6981.74 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
16. MT-ATP6 MT-ATP6 1592.00 6748.59
17. RPL13 ENSGALG00000006179 1587.00 6727.40 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
18. RPS28 ENSGALG00000024398 1547.00 6557.84 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
19. RPL23A ENSGALG00000003966 1480.00 6273.82 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
20. RPS8 ENSGALG00000010124 1478.00 6265.34 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
21. RPL15 ENSGALG00000011290 1437.00 6091.54 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
22. RPS4 RPS4 1281.00 5430.24
23. RPL35 ENSGALG00000035677 1266.00 5366.66 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
24. RPSA 1235.00 5235.25 ribosomal protein SA
25. RPLP1 ENSGALG00000030878 1156.00 4900.36 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
26. MT-ND1 MT-ND1 1154.00 4891.88
27. PPIA ENSGALG00000028600 1146.00 4857.97 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
28. MT-ND5 MT-ND5 1092.00 4629.06
29. RPL19 ENSGALG00000001658 1086.00 4603.63 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
30. RPL7A ENSGALG00000003197 1078.00 4569.71 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
31. RPL24 ENSGALG00000015339 1076.00 4561.24 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
32. RPL38 ENSGALG00000001465 1076.00 4561.24 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
33. MT-ND3 MT-ND3 1041.00 4412.87
34. RPS15A ENSGALG00000006771 1034.00 4383.19 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
35. RPS14 ENSGALG00000004588 1020.00 4323.85 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
36. RPL32 ENSGALG00000027142 979.00 4150.05 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
37. RPL29 ENSGALG00000026978 975.00 4133.09 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
38. RPS21 ENSGALG00000005338 973.00 4124.61 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
39. RPL27A ENSGALG00000005948 955.00 4048.31 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
40. RPL12 ENSGALG00000008806 953.00 4039.83 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
41. MDK ENSGALG00000008367 941.00 3988.96 midkine [Source:NCBI gene;Acc:423196]
42. RPL18A 937.00 3972.01 ribosomal protein L18a
43. RPL6 ENSGALG00000004818 929.00 3938.09 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
44. RPS12 ENSGALG00000013990 906.00 3840.59 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
45. RPL27 ENSGALG00000002837 905.00 3836.36 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
46. RPL8 ENSGALG00000016232 890.00 3772.77 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
47. RPL36 ENSGALG00000000474 889.00 3768.53 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
48. MT-ND4 MT-ND4 866.00 3671.03
49. RPL26 RPL26 861.00 3649.84
50. GNB2L1 ENSGALG00000000122 857.00 3632.88 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
51. RPS27A ENSGALG00000036790 851.00 3607.45 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
52. RPS11 ENSGALG00000017299 830.00 3518.43 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
53. RPS16 ENSGALG00000026490 826.00 3501.47 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
54. MT-ND6 MT-ND6 809.00 3429.40
55. RPS23 ENSGALG00000015617 786.00 3331.91 ribosomal protein S23
56. SNRPD1 ENSGALG00000041334 770.00 3264.08 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
57. RPL5 ENSGALG00000005922 749.00 3175.06 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
58. RPS7 ENSGALG00000016392 741.00 3141.15 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
59. RPL21 ENSGALG00000027035 720.00 3052.13 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
60. RPL7 ENSGALG00000035252 717.00 3039.41 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
61. RPS3A ENSGALG00000010077 717.00 3039.41 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
62. MT-CYB MT-CYB 696.00 2950.39
63. RPL14 ENSGALG00000043379 693.00 2937.67 ribosomal protein L14
64. RPL36AL ENSGALG00000004952 678.00 2874.09 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
65. FTH FTH 676.00 2865.61
66. RPL37A ENSGALG00000011472 672.00 2848.65 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
67. UBB ENSGALG00000004509 646.00 2738.44 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
68. RPL10A ENSGALG00000002644 644.00 2729.96 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
69. NME2 ENSGALG00000002932 642.00 2721.48 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
70. RPS25 ENSGALG00000007699 640.00 2713.00 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
71. ALDOC ENSGALG00000026077 635.00 2691.81 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
72. TCEB3 ENSGALG00000034625 607.00 2573.11 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
73. ENSGALG00000028992 ENSGALG00000028992 605.00 2564.64
74. ANP32B ENSGALG00000037483 569.00 2412.03 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
75. RPS13 ENSGALG00000006096 568.00 2407.79 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
76. RPS6 ENSGALG00000015082 568.00 2407.79 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
77. RPS3 ENSGALG00000017330 561.00 2378.12 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
78. CIRBP ENSGALG00000030918 558.00 2365.40 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
79. RPS20 ENSGALG00000014432 552.00 2339.96 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
80. PRDX1 ENSGALG00000010243 551.00 2335.73 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
81. ENO1 ENSGALG00000002377 539.00 2284.86 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
82. EEF1D 537.00 2276.38 eukaryotic translation elongation factor 1 delta, transcript variant X13
83. MT-CO1 MT-CO1 523.00 2217.03
84. RPS17 ENSGALG00000002157 520.00 2204.31 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
85. TMSB4X ENSGALG00000026383 515.00 2183.12 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
86. LDHB ENSGALG00000035836 514.00 2178.88 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
87. RPL23 ENSGALG00000001634 514.00 2178.88 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
88. RPS24 ENSGALG00000004871 509.00 2157.68 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
89. STMN1 ENSGALG00000001475 496.00 2102.58 stathmin 1 [Source:NCBI gene;Acc:396057]
90. HMGN2 HMGN2 471.00 1996.60
91. ENSGALG00000028649 ENSGALG00000028649 469.00 1988.12
92. RPL37 ENSGALG00000014833 450.00 1907.58 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
93. EIF5A2 ENSGALG00000009309 447.00 1894.86 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
94. CRHOA CRHOA 431.00 1827.04
95. MMP15 ENSGALG00000038758 415.00 1759.21 matrix metallopeptidase 15 [Source:HGNC Symbol;Acc:HGNC:7161]
96. ENSGALG00000018384 ENSGALG00000018384 399.00 1691.39
97. PKM ENSGALG00000001992 388.00 1644.76 pyruvate kinase M1/2 [Source:NCBI gene;Acc:396456]
98. ATP5G3 387.00 1640.52 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
99. RPL22 ENSGALG00000000719 372.00 1576.93 ribosomal protein L22 [Source:NCBI gene;Acc:373937]
100. RAN ENSGALG00000002569 368.00 1559.98 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA