Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_aorta, section s53.

Sample reads: 235,404. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 5719.00 24296.68
2. HBG1 HBG1 5554.00 23595.69
3. HBZ ENSGALG00000023740 5497.00 23353.53 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
4. HBE 3897.00 16556.07 hemoglobin subunit epsilon
5. RPLP0 ENSGALG00000023294 2901.00 12324.65 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
6. gga-mir-3533 ENSGALG00000027736 2757.00 11712.88 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
7. RPL35A ENSGALG00000007611, ENSGALG00000041230 2329.00 9894.55 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
8. RPS10 ENSGALG00000002813 2307.00 9801.09 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
9. RPS29 ENSGALG00000012229 2240.00 9516.45 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
10. RPS15 ENSGALG00000015195 2075.00 8815.46 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
11. gga-mir-3527 gga-mir-3527 1956.00 8309.90
12. RPL4 ENSGALG00000007711 1806.00 7672.63 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
13. EEF1A EEF1A 1702.00 7230.80
14. GAPDH ENSGALG00000014442 1688.00 7171.32 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
15. MT-ATP6 MT-ATP6 1599.00 6793.21
16. RPL13 ENSGALG00000006179 1513.00 6427.85 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
17. RPSA 1503.00 6385.37 ribosomal protein SA
18. RPS4 RPS4 1497.00 6359.87
19. RPL23A ENSGALG00000003966 1465.00 6223.93 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
20. RPS8 ENSGALG00000010124 1465.00 6223.93 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
21. PPIA ENSGALG00000028600 1456.00 6185.69 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
22. RPS2 ENSGALG00000005490 1405.00 5969.02 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
23. RPL15 ENSGALG00000011290 1383.00 5875.56 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
24. RPS28 ENSGALG00000024398 1261.00 5357.25 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
25. RPL19 ENSGALG00000001658 1239.00 5263.78 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
26. RPL24 ENSGALG00000015339 1233.00 5238.29 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
27. RPLP1 ENSGALG00000030878 1233.00 5238.29 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
28. MT-ND5 MT-ND5 1218.00 5174.57
29. RPS14 ENSGALG00000004588 1176.00 4996.13 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
30. MT-ND1 MT-ND1 1091.00 4635.02
31. RPS21 ENSGALG00000005338 1084.00 4605.28 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
32. RPL18A 1051.00 4465.08 ribosomal protein L18a
33. MT-ND3 MT-ND3 1044.00 4435.34
34. RPL27A ENSGALG00000005948 1003.00 4261.16 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
35. RPL29 ENSGALG00000026978 989.00 4201.68 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
36. RPL35 ENSGALG00000035677 986.00 4188.94 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
37. RPL27 ENSGALG00000002837 980.00 4163.44 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
38. RPL7A ENSGALG00000003197 966.00 4103.97 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
39. RPL6 ENSGALG00000004818 961.00 4082.73 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
40. RPL12 ENSGALG00000008806 925.00 3929.78 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
41. MT-ND4 MT-ND4 918.00 3900.04
42. RPS15A ENSGALG00000006771 910.00 3866.06 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
43. RPL36 ENSGALG00000000474 888.00 3772.59 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
44. RPL32 ENSGALG00000027142 879.00 3734.36 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
45. SNRPD1 ENSGALG00000041334 842.00 3577.16 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
46. RPL38 ENSGALG00000001465 806.00 3424.22 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
47. RPL26 RPL26 803.00 3411.48
48. ANP32B ENSGALG00000037483 798.00 3390.23 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
49. RPS11 ENSGALG00000017299 798.00 3390.23 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
50. GNB2L1 ENSGALG00000000122 787.00 3343.50 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
51. MDK ENSGALG00000008367 776.00 3296.77 midkine [Source:NCBI gene;Acc:423196]
52. RPL8 ENSGALG00000016232 776.00 3296.77 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
53. RPS23 ENSGALG00000015617 766.00 3254.28 ribosomal protein S23
54. RPS12 ENSGALG00000013990 745.00 3165.07 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
55. RPS16 ENSGALG00000026490 745.00 3165.07 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
56. RPL7 ENSGALG00000035252 743.00 3156.57 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
57. RPS7 ENSGALG00000016392 721.00 3063.11 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
58. MT-CYB MT-CYB 719.00 3054.61
59. RPS27A ENSGALG00000036790 719.00 3054.61 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
60. RPS3A ENSGALG00000010077 718.00 3050.36 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
61. MT-ND6 MT-ND6 706.00 2999.38
62. RPL21 ENSGALG00000027035 689.00 2927.16 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
63. RPL36AL ENSGALG00000004952 669.00 2842.19 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
64. RPL14 ENSGALG00000043379 664.00 2820.95 ribosomal protein L14
65. FTH FTH 650.00 2761.47
66. ALDOC ENSGALG00000026077 641.00 2723.23 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
67. RPL5 ENSGALG00000005922 638.00 2710.49 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
68. CIRBP ENSGALG00000030918 636.00 2701.99 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
69. NME2 ENSGALG00000002932 631.00 2680.75 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
70. ENO1 ENSGALG00000002377 628.00 2668.00 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
71. TCEB3 ENSGALG00000034625 612.00 2600.03 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
72. RPS13 ENSGALG00000006096 597.00 2536.30 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
73. RPS17 ENSGALG00000002157 597.00 2536.30 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
74. UBB ENSGALG00000004509 587.00 2493.82 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
75. ENSGALG00000018384 ENSGALG00000018384 578.00 2455.58
76. RPS3 ENSGALG00000017330 572.00 2430.09 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
77. RPL23 ENSGALG00000001634 550.00 2336.63 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
78. RPS25 ENSGALG00000007699 547.00 2323.88 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
79. RPL37A ENSGALG00000011472 545.00 2315.39 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
80. RPS24 ENSGALG00000004871 544.00 2311.14 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
81. PRDX1 ENSGALG00000010243 542.00 2302.64 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
82. RPL10A ENSGALG00000002644 540.00 2294.14 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
83. EIF5A2 ENSGALG00000009309 526.00 2234.67 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
84. MT-CO1 MT-CO1 513.00 2179.44
85. TMSB4X ENSGALG00000026383 495.00 2102.96 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
86. LDHB ENSGALG00000035836 494.00 2098.72 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
87. ENSGALG00000028649 ENSGALG00000028649 487.00 2068.98
88. ENSGALG00000028992 ENSGALG00000028992 484.00 2056.23
89. HMGN2 HMGN2 471.00 2001.00
90. RPS6 ENSGALG00000015082 471.00 2001.00 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
91. RPS20 ENSGALG00000014432 452.00 1920.28 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
92. STMN1 ENSGALG00000001475 444.00 1886.30 stathmin 1 [Source:NCBI gene;Acc:396057]
93. ATP5G3 435.00 1848.06 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
94. EEF1D 430.00 1826.82 eukaryotic translation elongation factor 1 delta, transcript variant X13
95. CRHOA CRHOA 415.00 1763.09
96. RPL37 ENSGALG00000014833 412.00 1750.35 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
97. ZNF593 ENSGALG00000000542 411.00 1746.10 zinc finger protein 593 [Source:NCBI gene;Acc:419549]
98. MMP15 ENSGALG00000038758 397.00 1686.62 matrix metallopeptidase 15 [Source:HGNC Symbol;Acc:HGNC:7161]
99. PKM ENSGALG00000001992 397.00 1686.62 pyruvate kinase M1/2 [Source:NCBI gene;Acc:396456]
100. DYL1 ENSGALG00000007153 379.00 1610.15 dynein light chain 1 cytoplasmic [Source:NCBI gene;Acc:427708]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA