Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_aorta, section s48.

Sample reads: 235,985. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 6062.00 25689.92
2. HBZ ENSGALG00000023740 5807.00 24609.27 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
3. HBG1 HBG1 4782.00 20265.46
4. HBE 3171.00 13438.26 hemoglobin subunit epsilon
5. RPLP0 ENSGALG00000023294 2842.00 12044.01 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
6. gga-mir-3533 ENSGALG00000027736 2734.00 11586.32 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
7. RPL35A ENSGALG00000007611, ENSGALG00000041230 2434.00 10314.96 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
8. RPS15 ENSGALG00000015195 2165.00 9174.97 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
9. RPS10 ENSGALG00000002813 2127.00 9013.93 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
10. RPS29 ENSGALG00000012229 2056.00 8713.05 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
11. RPL4 ENSGALG00000007711 1985.00 8412.16 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
12. gga-mir-3527 gga-mir-3527 1980.00 8390.97
13. RPL13 ENSGALG00000006179 1726.00 7314.55 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
14. GAPDH ENSGALG00000014442 1675.00 7098.42 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
15. MT-ATP6 MT-ATP6 1637.00 6937.38
16. EEF1A EEF1A 1622.00 6873.81
17. RPS2 ENSGALG00000005490 1587.00 6725.49 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
18. RPS8 ENSGALG00000010124 1429.00 6055.91 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
19. RPL23A ENSGALG00000003966 1396.00 5916.06 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
20. RPSA 1369.00 5801.63 ribosomal protein SA
21. RPS4 RPS4 1360.00 5763.49
22. RPL15 ENSGALG00000011290 1317.00 5581.27 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
23. RPS28 ENSGALG00000024398 1266.00 5365.13 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
24. PPIA ENSGALG00000028600 1213.00 5140.53 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
25. RPLP1 ENSGALG00000030878 1190.00 5043.06 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
26. MT-ND5 MT-ND5 1169.00 4954.06
27. MT-ND1 MT-ND1 1159.00 4911.68
28. MT-ND3 MT-ND3 1154.00 4890.49
29. RPS14 ENSGALG00000004588 1124.00 4763.36 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
30. RPL19 ENSGALG00000001658 1114.00 4720.98 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
31. RPL24 ENSGALG00000015339 1114.00 4720.98 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
32. RPL27A ENSGALG00000005948 1102.00 4670.12 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
33. RPL6 ENSGALG00000004818 1102.00 4670.12 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
34. RPL35 ENSGALG00000035677 1090.00 4619.27 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
35. RPS15A ENSGALG00000006771 1081.00 4581.13 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
36. RPS21 ENSGALG00000005338 1057.00 4479.42 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
37. RPL12 ENSGALG00000008806 1026.00 4348.05 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
38. RPL36 ENSGALG00000000474 1024.00 4339.57 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
39. RPL29 ENSGALG00000026978 1012.00 4288.72 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
40. RPL7A ENSGALG00000003197 1010.00 4280.24 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
41. RPL32 ENSGALG00000027142 982.00 4161.58 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
42. RPS12 ENSGALG00000013990 941.00 3987.83 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
43. RPL18A 912.00 3864.93 ribosomal protein L18a
44. RPS23 ENSGALG00000015617 912.00 3864.93 ribosomal protein S23
45. RPL38 ENSGALG00000001465 897.00 3801.36 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
46. RPL27 ENSGALG00000002837 882.00 3737.79 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
47. MT-ND4 MT-ND4 865.00 3665.75
48. RPS16 ENSGALG00000026490 855.00 3623.37 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
49. RPL7 ENSGALG00000035252 827.00 3504.71 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
50. RPL26 RPL26 823.00 3487.76
51. RPL8 ENSGALG00000016232 770.00 3263.15 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
52. ANP32B ENSGALG00000037483 768.00 3254.68 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
53. RPL36AL ENSGALG00000004952 762.00 3229.25 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
54. SNRPD1 ENSGALG00000041334 746.00 3161.45 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
55. RPS3A ENSGALG00000010077 745.00 3157.21 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
56. RPS7 ENSGALG00000016392 744.00 3152.97 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
57. RPS11 ENSGALG00000017299 734.00 3110.59 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
58. MDK ENSGALG00000008367 724.00 3068.21 midkine [Source:NCBI gene;Acc:423196]
59. RPL14 ENSGALG00000043379 720.00 3051.26 ribosomal protein L14
60. GNB2L1 ENSGALG00000000122 709.00 3004.64 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
61. RPL37A ENSGALG00000011472 702.00 2974.98 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
62. RPS27A ENSGALG00000036790 701.00 2970.74 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
63. RPL21 ENSGALG00000027035 690.00 2924.13 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
64. TMSB4X ENSGALG00000026383 664.00 2813.94 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
65. MT-CO1 MT-CO1 653.00 2767.32
66. TCEB3 ENSGALG00000034625 643.00 2724.95 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
67. MT-ND6 MT-ND6 642.00 2720.71
68. RPS13 ENSGALG00000006096 637.00 2699.52 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
69. RPL5 ENSGALG00000005922 633.00 2682.57 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
70. PRDX1 ENSGALG00000010243 621.00 2631.71 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
71. MT-CYB MT-CYB 616.00 2610.52
72. CIRBP ENSGALG00000030918 615.00 2606.29 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
73. RPL10A ENSGALG00000002644 605.00 2563.91 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
74. RPS3 ENSGALG00000017330 602.00 2551.19 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
75. UBB ENSGALG00000004509 592.00 2508.81 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
76. RPS24 ENSGALG00000004871 590.00 2500.34 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
77. NME2 ENSGALG00000002932 589.00 2496.10 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
78. ENSGALG00000018384 ENSGALG00000018384 555.00 2352.01
79. ENO1 ENSGALG00000002377 553.00 2343.54 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
80. RPS25 ENSGALG00000007699 553.00 2343.54 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
81. FTH FTH 551.00 2335.06
82. RPL23 ENSGALG00000001634 550.00 2330.82 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
83. RPS17 ENSGALG00000002157 540.00 2288.45 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
84. ENSGALG00000028992 ENSGALG00000028992 539.00 2284.21
85. ALDOC ENSGALG00000026077 512.00 2169.79 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
86. RPS6 ENSGALG00000015082 493.00 2089.27 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
87. LDHB ENSGALG00000035836 481.00 2038.41 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
88. EEF1D 474.00 2008.75 eukaryotic translation elongation factor 1 delta, transcript variant X13
89. STMN1 ENSGALG00000001475 467.00 1979.08 stathmin 1 [Source:NCBI gene;Acc:396057]
90. EIF5A2 ENSGALG00000009309 464.00 1966.37 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
91. HMGN2 HMGN2 456.00 1932.47
92. CRHOA CRHOA 445.00 1885.85
93. RPS20 ENSGALG00000014432 425.00 1801.09 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
94. ENSGALG00000028649 ENSGALG00000028649 411.00 1741.76
95. PKM ENSGALG00000001992 409.00 1733.29 pyruvate kinase M1/2 [Source:NCBI gene;Acc:396456]
96. ATP5G3 406.00 1720.57 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
97. RPL37 ENSGALG00000014833 403.00 1707.86 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
98. CHCHD2 ENSGALG00000002495 392.00 1661.24 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:NCBI gene;Acc:417544]
99. SLC25A6_1 ENSGALG00000016691 376.00 1593.44 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
100. ZNF593 ENSGALG00000000542 375.00 1589.20 zinc finger protein 593 [Source:NCBI gene;Acc:419549]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA