Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_aorta, section s47.

Sample reads: 234,942. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. HBZ ENSGALG00000023740 6696.00 28504.90 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
2. HBG1 HBG1 6485.00 27606.67
3. MT-CO3 MT-CO3 6017.00 25614.39
4. HBE 4424.00 18832.98 hemoglobin subunit epsilon
5. RPLP0 ENSGALG00000023294 2695.00 11472.63 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
6. gga-mir-3533 ENSGALG00000027736 2556.00 10880.90 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
7. RPL35A ENSGALG00000007611, ENSGALG00000041230 2416.00 10284.92 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
8. RPS29 ENSGALG00000012229 2297.00 9778.34 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
9. RPS10 ENSGALG00000002813 2216.00 9433.52 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
10. gga-mir-3527 gga-mir-3527 2186.00 9305.81
11. MT-ATP6 MT-ATP6 1938.00 8250.07
12. RPS15 ENSGALG00000015195 1854.00 7892.49 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
13. RPL4 ENSGALG00000007711 1838.00 7824.37 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
14. MT-ND5 MT-ND5 1514.00 6445.10
15. RPS2 ENSGALG00000005490 1486.00 6325.91 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
16. RPS4 RPS4 1486.00 6325.91
17. RPS8 ENSGALG00000010124 1486.00 6325.91 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
18. RPS28 ENSGALG00000024398 1471.00 6262.05 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
19. RPL23A ENSGALG00000003966 1454.00 6189.68 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
20. GAPDH ENSGALG00000014442 1440.00 6130.09 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
21. RPL13 ENSGALG00000006179 1430.00 6087.52 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
22. EEF1A EEF1A 1426.00 6070.49
23. MT-ND1 MT-ND1 1334.00 5678.84
24. PPIA ENSGALG00000028600 1288.00 5483.02 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
25. RPLP1 ENSGALG00000030878 1233.00 5248.89 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
26. RPL19 ENSGALG00000001658 1223.00 5206.32 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
27. RPSA 1217.00 5180.77 ribosomal protein SA
28. RPL15 ENSGALG00000011290 1191.00 5070.09 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
29. RPS14 ENSGALG00000004588 1157.00 4925.35 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
30. RPL24 ENSGALG00000015339 1156.00 4921.10 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
31. RPL27A ENSGALG00000005948 1137.00 4840.21 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
32. RPS21 ENSGALG00000005338 1094.00 4657.16 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
33. MT-ND4 MT-ND4 1048.00 4461.34
34. MT-ND3 MT-ND3 1010.00 4299.57
35. RPL7A ENSGALG00000003197 995.00 4235.72 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
36. RPS15A ENSGALG00000006771 974.00 4146.32 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
37. RPL18A 969.00 4125.04 ribosomal protein L18a
38. RPL35 ENSGALG00000035677 968.00 4120.78 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
39. RPL12 ENSGALG00000008806 947.00 4031.38 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
40. RPL32 ENSGALG00000027142 931.00 3963.27 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
41. RPL38 ENSGALG00000001465 926.00 3941.99 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
42. RPL29 ENSGALG00000026978 914.00 3890.90 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
43. MT-ND6 MT-ND6 905.00 3852.59
44. RPL27 ENSGALG00000002837 895.00 3810.02 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
45. RPL26 RPL26 866.00 3686.57
46. RPL36 ENSGALG00000000474 857.00 3648.25 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
47. RPL6 ENSGALG00000004818 856.00 3644.00 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
48. RPL8 ENSGALG00000016232 819.00 3486.49 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
49. RPS12 ENSGALG00000013990 816.00 3473.72 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
50. RPL7 ENSGALG00000035252 785.00 3341.75 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
51. SNRPD1 ENSGALG00000041334 784.00 3337.49 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
52. RPS7 ENSGALG00000016392 782.00 3328.98 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
53. RPS16 ENSGALG00000026490 767.00 3265.12 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
54. RPS3A ENSGALG00000010077 762.00 3243.84 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
55. RPS23 ENSGALG00000015617 752.00 3201.27 ribosomal protein S23
56. ENSGALG00000018384 ENSGALG00000018384 747.00 3179.98
57. MT-CYB MT-CYB 747.00 3179.98
58. RPL21 ENSGALG00000027035 699.00 2975.65 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
59. RPS27A ENSGALG00000036790 694.00 2954.36 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
60. GNB2L1 ENSGALG00000000122 689.00 2933.08 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
61. RPS11 ENSGALG00000017299 681.00 2899.02 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
62. NME2 ENSGALG00000002932 668.00 2843.68 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
63. RPL14 ENSGALG00000043379 665.00 2830.91 ribosomal protein L14
64. RPL10A ENSGALG00000002644 656.00 2792.59 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
65. RPL36AL ENSGALG00000004952 655.00 2788.34 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
66. RPS25 ENSGALG00000007699 647.00 2754.28 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
67. TMSB4X ENSGALG00000026383 634.00 2698.94 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
68. RPS24 ENSGALG00000004871 615.00 2618.06 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
69. MT-CO1 MT-CO1 611.00 2601.03
70. MDK ENSGALG00000008367 600.00 2554.20 midkine [Source:NCBI gene;Acc:423196]
71. ANP32B ENSGALG00000037483 593.00 2524.40 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
72. RPL5 ENSGALG00000005922 591.00 2515.89 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
73. RPS17 ENSGALG00000002157 582.00 2477.58 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
74. FTH FTH 578.00 2460.55
75. TCEB3 ENSGALG00000034625 578.00 2460.55 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
76. CIRBP ENSGALG00000030918 567.00 2413.72 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
77. ENSGALG00000028992 ENSGALG00000028992 566.00 2409.46
78. ALDOC ENSGALG00000026077 562.00 2392.44 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
79. ENO1 ENSGALG00000002377 562.00 2392.44 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
80. ENSGALG00000028649 ENSGALG00000028649 561.00 2388.18
81. UBB ENSGALG00000004509 560.00 2383.92 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
82. PRDX1 ENSGALG00000010243 538.00 2290.27 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
83. LDHB ENSGALG00000035836 516.00 2196.61 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
84. RPL23 ENSGALG00000001634 516.00 2196.61 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
85. RPS13 ENSGALG00000006096 515.00 2192.36 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
86. RPS6 ENSGALG00000015082 496.00 2111.47 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
87. RPS3 ENSGALG00000017330 482.00 2051.88 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
88. RPS20 ENSGALG00000014432 472.00 2009.31 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
89. HMGN2 HMGN2 459.00 1953.96
90. EEF1D 454.00 1932.68 eukaryotic translation elongation factor 1 delta, transcript variant X13
91. RPL37A ENSGALG00000011472 448.00 1907.14 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
92. EIF5A2 ENSGALG00000009309 446.00 1898.62 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
93. STMN1 ENSGALG00000001475 436.00 1856.05 stathmin 1 [Source:NCBI gene;Acc:396057]
94. RPL37 ENSGALG00000014833 419.00 1783.68 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
95. RAN ENSGALG00000002569 414.00 1762.40 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
96. ATP5G3 408.00 1736.86 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
97. CRHOA CRHOA 406.00 1728.34
98. HMGN5 ENSGALG00000007131 373.00 1587.86 high mobility group nucleosome binding domain 5, transcript variant X1
99. RPL22 ENSGALG00000000719 366.00 1558.06 ribosomal protein L22 [Source:NCBI gene;Acc:373937]
100. CHCHD2 ENSGALG00000002495 359.00 1528.26 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:NCBI gene;Acc:417544]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA