Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_aorta, section s46.

Sample reads: 235,186. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 6057.00 25756.16
2. HBZ ENSGALG00000023740 5600.00 23812.86 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
3. HBG1 HBG1 4934.00 20980.83
4. RPLP0 ENSGALG00000023294 2725.00 11587.51 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
5. HBE 2687.00 11425.92 hemoglobin subunit epsilon
6. gga-mir-3533 ENSGALG00000027736 2572.00 10936.91 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
7. RPL35A ENSGALG00000007611, ENSGALG00000041230 2366.00 10060.94 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
8. RPS15 ENSGALG00000015195 2329.00 9903.60 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
9. RPS10 ENSGALG00000002813 2191.00 9316.78 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
10. RPL4 ENSGALG00000007711 2100.00 8929.82 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
11. RPS29 ENSGALG00000012229 2063.00 8772.49 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
12. gga-mir-3527 gga-mir-3527 1969.00 8372.77
13. MT-ATP6 MT-ATP6 1923.00 8177.17
14. GAPDH ENSGALG00000014442 1839.00 7819.97 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
15. RPL13 ENSGALG00000006179 1755.00 7462.78 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
16. RPS2 ENSGALG00000005490 1655.00 7037.55 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
17. EEF1A EEF1A 1576.00 6701.62
18. RPS28 ENSGALG00000024398 1563.00 6646.34 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
19. MT-ND5 MT-ND5 1554.00 6608.07
20. RPL15 ENSGALG00000011290 1554.00 6608.07 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
21. RPS8 ENSGALG00000010124 1512.00 6429.47 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
22. RPL23A ENSGALG00000003966 1352.00 5749.11 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
23. RPSA 1352.00 5749.11 ribosomal protein SA
24. RPS4 RPS4 1323.00 5625.79
25. RPL19 ENSGALG00000001658 1305.00 5549.25 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
26. MT-ND1 MT-ND1 1294.00 5502.47
27. RPLP1 ENSGALG00000030878 1249.00 5311.12 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
28. RPL24 ENSGALG00000015339 1227.00 5217.57 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
29. PPIA ENSGALG00000028600 1224.00 5204.81 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
30. RPS15A ENSGALG00000006771 1177.00 5004.95 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
31. RPL35 ENSGALG00000035677 1126.00 4788.09 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
32. RPL27A ENSGALG00000005948 1123.00 4775.33 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
33. RPS14 ENSGALG00000004588 1107.00 4707.29 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
34. MT-ND3 MT-ND3 1083.00 4605.24
35. MT-ND4 MT-ND4 1049.00 4460.66
36. RPL6 ENSGALG00000004818 1038.00 4413.88 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
37. RPS12 ENSGALG00000013990 1022.00 4345.85 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
38. RPL7A ENSGALG00000003197 1018.00 4328.84 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
39. RPS21 ENSGALG00000005338 1010.00 4294.82 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
40. RPL29 ENSGALG00000026978 982.00 4175.76 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
41. RPL18A 953.00 4052.44 ribosomal protein L18a
42. SNRPD1 ENSGALG00000041334 948.00 4031.18 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
43. RPL32 ENSGALG00000027142 945.00 4018.42 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
44. RPS23 ENSGALG00000015617 932.00 3963.14 ribosomal protein S23
45. RPL36 ENSGALG00000000474 898.00 3818.56 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
46. RPL38 ENSGALG00000001465 893.00 3797.30 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
47. RPL27 ENSGALG00000002837 869.00 3695.25 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
48. RPL12 ENSGALG00000008806 867.00 3686.74 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
49. MT-ND6 MT-ND6 851.00 3618.71
50. RPL8 ENSGALG00000016232 847.00 3601.70 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
51. RPS16 ENSGALG00000026490 825.00 3508.15 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
52. ANP32B ENSGALG00000037483 823.00 3499.64 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
53. RPS3A ENSGALG00000010077 821.00 3491.14 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
54. RPL26 RPL26 788.00 3350.81
55. RPL36AL ENSGALG00000004952 766.00 3257.26 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
56. RPL21 ENSGALG00000027035 752.00 3197.73 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
57. MT-CYB MT-CYB 749.00 3184.97
58. RPS7 ENSGALG00000016392 733.00 3116.93 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
59. MDK ENSGALG00000008367 731.00 3108.43 midkine [Source:NCBI gene;Acc:423196]
60. NME2 ENSGALG00000002932 729.00 3099.92 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
61. CIRBP ENSGALG00000030918 718.00 3053.15 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
62. RPL7 ENSGALG00000035252 703.00 2989.37 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
63. RPS27A ENSGALG00000036790 700.00 2976.61 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
64. GNB2L1 ENSGALG00000000122 672.00 2857.54 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
65. RPL14 ENSGALG00000043379 668.00 2840.53 ribosomal protein L14
66. PRDX1 ENSGALG00000010243 655.00 2785.25 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
67. RPS11 ENSGALG00000017299 649.00 2759.74 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
68. RPL5 ENSGALG00000005922 645.00 2742.73 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
69. RPL37A ENSGALG00000011472 633.00 2691.70 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
70. ENSGALG00000018384 ENSGALG00000018384 626.00 2661.94
71. TCEB3 ENSGALG00000034625 617.00 2623.67 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
72. ENSGALG00000028992 ENSGALG00000028992 614.00 2610.91
73. RPS25 ENSGALG00000007699 614.00 2610.91 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
74. UBB ENSGALG00000004509 598.00 2542.87 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
75. ENO1 ENSGALG00000002377 597.00 2538.62 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
76. RPS13 ENSGALG00000006096 593.00 2521.61 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
77. TMSB4X ENSGALG00000026383 587.00 2496.10 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
78. MT-CO1 MT-CO1 568.00 2415.30
79. HMGN2 HMGN2 562.00 2389.79
80. RPS17 ENSGALG00000002157 549.00 2334.51 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
81. RPS24 ENSGALG00000004871 538.00 2287.74 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
82. RPS20 ENSGALG00000014432 526.00 2236.71 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
83. RPL10A ENSGALG00000002644 523.00 2223.95 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
84. ENSGALG00000028649 ENSGALG00000028649 516.00 2194.19
85. ALDOC ENSGALG00000026077 509.00 2164.42 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
86. RPL23 ENSGALG00000001634 506.00 2151.66 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
87. LDHB ENSGALG00000035836 490.00 2083.63 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
88. STMN1 ENSGALG00000001475 489.00 2079.37 stathmin 1 [Source:NCBI gene;Acc:396057]
89. EIF5A2 ENSGALG00000009309 487.00 2070.87 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
90. RPS3 ENSGALG00000017330 471.00 2002.83 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
91. FTH FTH 464.00 1973.07
92. RPL37 ENSGALG00000014833 450.00 1913.53 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
93. MMP15 ENSGALG00000038758 438.00 1862.51 matrix metallopeptidase 15 [Source:HGNC Symbol;Acc:HGNC:7161]
94. PKM ENSGALG00000001992 425.00 1807.23 pyruvate kinase M1/2 [Source:NCBI gene;Acc:396456]
95. RPS6 ENSGALG00000015082 409.00 1739.19 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
96. EEF1D 403.00 1713.68 eukaryotic translation elongation factor 1 delta, transcript variant X13
97. RPL31 ENSGALG00000016775 379.00 1611.62 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
98. DYL1 ENSGALG00000007153 373.00 1586.11 dynein light chain 1 cytoplasmic [Source:NCBI gene;Acc:427708]
99. CRHOA CRHOA 370.00 1573.35
100. HMGN5 ENSGALG00000007131 370.00 1573.35 high mobility group nucleosome binding domain 5, transcript variant X1
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA