Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_aorta, section s43.

Sample reads: 234,931. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 5731.00 24397.30
2. RPLP0 ENSGALG00000023294 2995.00 12749.94 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
3. RPL35A ENSGALG00000007611, ENSGALG00000041230 2930.00 12473.23 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
4. gga-mir-3533 ENSGALG00000027736 2809.00 11958.13 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
5. RPS15 ENSGALG00000015195 2499.00 10638.43 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
6. RPS10 ENSGALG00000002813 2432.00 10353.21 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
7. RPS29 ENSGALG00000012229 2341.00 9965.82 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
8. RPL4 ENSGALG00000007711 2333.00 9931.76 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
9. gga-mir-3527 gga-mir-3527 2234.00 9510.31
10. GAPDH ENSGALG00000014442 2027.00 8629.09 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
11. EEF1A EEF1A 1845.00 7854.31
12. RPS28 ENSGALG00000024398 1798.00 7654.22 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
13. RPL13 ENSGALG00000006179 1773.00 7547.80 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
14. RPS2 ENSGALG00000005490 1671.00 7113.57 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
15. RPL23A ENSGALG00000003966 1652.00 7032.69 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
16. RPL15 ENSGALG00000011290 1635.00 6960.32 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
17. MT-ATP6 MT-ATP6 1631.00 6943.29
18. RPS4 RPS4 1592.00 6777.27
19. RPS8 ENSGALG00000010124 1573.00 6696.38 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
20. MT-ND1 MT-ND1 1399.00 5955.65
21. RPSA 1391.00 5921.59 ribosomal protein SA
22. MT-ND5 MT-ND5 1388.00 5908.82
23. RPL24 ENSGALG00000015339 1317.00 5606.57 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
24. RPLP1 ENSGALG00000030878 1306.00 5559.74 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
25. RPL19 ENSGALG00000001658 1282.00 5457.57 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
26. PPIA ENSGALG00000028600 1270.00 5406.49 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
27. RPS14 ENSGALG00000004588 1269.00 5402.23 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
28. HBZ ENSGALG00000023740 1251.00 5325.60 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
29. RPL35 ENSGALG00000035677 1233.00 5248.98 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
30. RPS21 ENSGALG00000005338 1206.00 5134.03 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
31. RPS15A ENSGALG00000006771 1196.00 5091.46 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
32. RPL7A ENSGALG00000003197 1152.00 4904.15 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
33. RPL32 ENSGALG00000027142 1134.00 4827.52 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
34. RPL29 ENSGALG00000026978 1131.00 4814.75 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
35. RPL27A ENSGALG00000005948 1125.00 4789.21 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
36. MT-ND4 MT-ND4 1107.00 4712.58
37. RPL36 ENSGALG00000000474 1090.00 4640.21 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
38. RPL18A 1039.00 4423.10 ribosomal protein L18a
39. RPL38 ENSGALG00000001465 1023.00 4354.99 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
40. RPL12 ENSGALG00000008806 1020.00 4342.22 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
41. MT-ND3 MT-ND3 1011.00 4303.90
42. SNRPD1 ENSGALG00000041334 999.00 4252.82 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
43. RPS23 ENSGALG00000015617 977.00 4159.16 ribosomal protein S23
44. RPL27 ENSGALG00000002837 976.00 4154.91 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
45. RPL6 ENSGALG00000004818 943.00 4014.42 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
46. HBG1 HBG1 918.00 3908.00
47. RPL26 RPL26 902.00 3839.88
48. MT-CYB MT-CYB 877.00 3733.46
49. RPS12 ENSGALG00000013990 871.00 3707.91 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
50. RPS11 ENSGALG00000017299 868.00 3695.14 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
51. RPS27A ENSGALG00000036790 850.00 3618.51 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
52. RPL8 ENSGALG00000016232 844.00 3592.97 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
53. MT-ND6 MT-ND6 835.00 3554.66
54. RPS7 ENSGALG00000016392 826.00 3516.35 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
55. RPS16 ENSGALG00000026490 825.00 3512.09 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
56. RPS3A ENSGALG00000010077 812.00 3456.75 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
57. RPL36AL ENSGALG00000004952 810.00 3448.23 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
58. CIRBP ENSGALG00000030918 776.00 3303.49 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
59. RPL7 ENSGALG00000035252 761.00 3239.64 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
60. GNB2L1 ENSGALG00000000122 739.00 3145.98 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
61. TCEB3 ENSGALG00000034625 736.00 3133.21 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
62. NME2 ENSGALG00000002932 727.00 3094.89 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
63. RPL14 ENSGALG00000043379 719.00 3060.84 ribosomal protein L14
64. RPL5 ENSGALG00000005922 705.00 3001.24 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
65. RPL21 ENSGALG00000027035 695.00 2958.67 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
66. HBE 685.00 2916.10 hemoglobin subunit epsilon
67. ANP32B ENSGALG00000037483 680.00 2894.81 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
68. MDK ENSGALG00000008367 676.00 2877.78 midkine [Source:NCBI gene;Acc:423196]
69. HMGN2 HMGN2 667.00 2839.47
70. RPL10A ENSGALG00000002644 667.00 2839.47 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
71. LDHB ENSGALG00000035836 665.00 2830.96 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
72. RPS17 ENSGALG00000002157 656.00 2792.64 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
73. RPS3 ENSGALG00000017330 649.00 2762.84 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
74. UBB ENSGALG00000004509 645.00 2745.81 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
75. ENO1 ENSGALG00000002377 633.00 2694.73 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
76. RPL37A ENSGALG00000011472 630.00 2681.96 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
77. TMSB4X ENSGALG00000026383 615.00 2618.10 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
78. RPS25 ENSGALG00000007699 600.00 2554.25 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
79. MT-CO1 MT-CO1 599.00 2549.99
80. PRDX1 ENSGALG00000010243 599.00 2549.99 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
81. EEF1D 577.00 2456.33 eukaryotic translation elongation factor 1 delta, transcript variant X13
82. RPS13 ENSGALG00000006096 571.00 2430.79 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
83. ENSGALG00000028992 ENSGALG00000028992 556.00 2366.93
84. RPS24 ENSGALG00000004871 551.00 2345.65 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
85. ALDOC ENSGALG00000026077 547.00 2328.62 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
86. RPL23 ENSGALG00000001634 544.00 2315.85 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
87. RPS20 ENSGALG00000014432 529.00 2251.99 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
88. FTH FTH 515.00 2192.39
89. STMN1 ENSGALG00000001475 512.00 2179.62 stathmin 1 [Source:NCBI gene;Acc:396057]
90. EIF5A2 ENSGALG00000009309 504.00 2145.57 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
91. ENSGALG00000028649 ENSGALG00000028649 469.00 1996.57
92. RPS6 ENSGALG00000015082 466.00 1983.80 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
93. RPL37 ENSGALG00000014833 449.00 1911.43 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
94. ATP5G3 442.00 1881.63 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
95. CRHOA CRHOA 430.00 1830.54
96. DYL1 ENSGALG00000007153 420.00 1787.97 dynein light chain 1 cytoplasmic [Source:NCBI gene;Acc:427708]
97. MMP15 ENSGALG00000038758 413.00 1758.17 matrix metallopeptidase 15 [Source:HGNC Symbol;Acc:HGNC:7161]
98. RPL31 ENSGALG00000016775 411.00 1749.66 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
99. SLC25A6_1 ENSGALG00000016691 408.00 1736.89 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
100. RPL22 ENSGALG00000000719 404.00 1719.86 ribosomal protein L22 [Source:NCBI gene;Acc:373937]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA