Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_aorta, section s42.

Sample reads: 235,134. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 5693.00 24213.89
2. RPLP0 ENSGALG00000023294 3207.00 13640.25 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
3. gga-mir-3533 ENSGALG00000027736 2876.00 12232.42 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
4. RPL35A ENSGALG00000007611, ENSGALG00000041230 2602.00 11067.02 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
5. RPS10 ENSGALG00000002813 2519.00 10714.00 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
6. RPS15 ENSGALG00000015195 2430.00 10335.46 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
7. EEF1A EEF1A 2375.00 10101.53
8. RPS29 ENSGALG00000012229 2352.00 10003.70 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
9. gga-mir-3527 gga-mir-3527 2230.00 9484.80
10. RPL4 ENSGALG00000007711 2031.00 8638.40 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
11. GAPDH ENSGALG00000014442 1947.00 8281.12 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
12. RPL13 ENSGALG00000006179 1815.00 7719.69 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
13. RPS4 RPS4 1629.00 6928.58
14. RPS2 ENSGALG00000005490 1625.00 6911.57 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
15. MT-ATP6 MT-ATP6 1595.00 6783.97
16. RPL23A ENSGALG00000003966 1595.00 6783.97 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
17. RPS8 ENSGALG00000010124 1528.00 6499.00 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
18. RPS28 ENSGALG00000024398 1376.00 5852.50 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
19. RPSA 1373.00 5839.75 ribosomal protein SA
20. RPL15 ENSGALG00000011290 1368.00 5818.48 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
21. MT-ND5 MT-ND5 1329.00 5652.60
22. PPIA ENSGALG00000028600 1324.00 5631.33 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
23. MT-ND1 MT-ND1 1312.00 5580.30
24. RPLP1 ENSGALG00000030878 1306.00 5554.78 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
25. MT-ND3 MT-ND3 1287.00 5473.96
26. RPL35 ENSGALG00000035677 1284.00 5461.20 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
27. RPL19 ENSGALG00000001658 1264.00 5376.14 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
28. RPS14 ENSGALG00000004588 1243.00 5286.82 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
29. HBZ ENSGALG00000023740 1230.00 5231.53 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
30. RPL24 ENSGALG00000015339 1227.00 5218.77 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
31. RPS15A ENSGALG00000006771 1163.00 4946.56 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
32. RPL7A ENSGALG00000003197 1144.00 4865.75 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
33. RPL36 ENSGALG00000000474 1129.00 4801.95 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
34. RPL6 ENSGALG00000004818 1092.00 4644.58 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
35. HBG1 HBG1 1089.00 4631.82
36. RPS21 ENSGALG00000005338 1073.00 4563.76 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
37. RPL18A 1060.00 4508.47 ribosomal protein L18a
38. RPL32 ENSGALG00000027142 1059.00 4504.22 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
39. RPL29 ENSGALG00000026978 1057.00 4495.71 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
40. RPL27A ENSGALG00000005948 1041.00 4427.66 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
41. RPL7 ENSGALG00000035252 1034.00 4397.89 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
42. RPL27 ENSGALG00000002837 1031.00 4385.13 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
43. MT-ND4 MT-ND4 965.00 4104.41
44. RPL38 ENSGALG00000001465 942.00 4006.58 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
45. RPS23 ENSGALG00000015617 926.00 3938.53 ribosomal protein S23
46. RPL12 ENSGALG00000008806 917.00 3900.25 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
47. SNRPD1 ENSGALG00000041334 910.00 3870.48 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
48. RPS3A ENSGALG00000010077 851.00 3619.54 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
49. GNB2L1 ENSGALG00000000122 844.00 3589.76 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
50. RPS12 ENSGALG00000013990 833.00 3542.98 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
51. RPS16 ENSGALG00000026490 813.00 3457.91 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
52. RPS27A ENSGALG00000036790 813.00 3457.91 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
53. RPL26 RPL26 806.00 3428.14
54. CIRBP ENSGALG00000030918 794.00 3377.10 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
55. HBE 784.00 3334.57 hemoglobin subunit epsilon
56. RPL8 ENSGALG00000016232 774.00 3292.03 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
57. RPL36AL ENSGALG00000004952 767.00 3262.26 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
58. RPS11 ENSGALG00000017299 765.00 3253.75 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
59. MT-CYB MT-CYB 757.00 3219.73
60. NME2 ENSGALG00000002932 754.00 3206.97 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
61. RPS7 ENSGALG00000016392 752.00 3198.46 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
62. ANP32B ENSGALG00000037483 739.00 3143.17 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
63. TCEB3 ENSGALG00000034625 722.00 3070.86 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
64. PRDX1 ENSGALG00000010243 685.00 2913.49 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
65. RPL14 ENSGALG00000043379 683.00 2904.99 ribosomal protein L14
66. ENO1 ENSGALG00000002377 680.00 2892.23 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
67. RPS13 ENSGALG00000006096 680.00 2892.23 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
68. RPL5 ENSGALG00000005922 671.00 2853.95 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
69. TMSB4X ENSGALG00000026383 661.00 2811.41 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
70. RPS17 ENSGALG00000002157 658.00 2798.65 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
71. RPS24 ENSGALG00000004871 644.00 2739.11 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
72. MT-ND6 MT-ND6 641.00 2726.35
73. ALDOC ENSGALG00000026077 625.00 2658.30 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
74. RPL23 ENSGALG00000001634 625.00 2658.30 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
75. RPL37A ENSGALG00000011472 624.00 2654.04 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
76. LDHB ENSGALG00000035836 606.00 2577.48 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
77. RPL21 ENSGALG00000027035 602.00 2560.47 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
78. RPS25 ENSGALG00000007699 602.00 2560.47 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
79. UBB ENSGALG00000004509 600.00 2551.96 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
80. FTH FTH 582.00 2475.41
81. ENSGALG00000028992 ENSGALG00000028992 553.00 2352.06
82. HMGN2 HMGN2 548.00 2330.79
83. MT-CO1 MT-CO1 540.00 2296.77
84. RPL10A ENSGALG00000002644 539.00 2292.51 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
85. RPS3 ENSGALG00000017330 537.00 2284.01 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
86. RPL37 ENSGALG00000014833 524.00 2228.72 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
87. EEF1D 512.00 2177.68 eukaryotic translation elongation factor 1 delta, transcript variant X13
88. MDK ENSGALG00000008367 504.00 2143.65 midkine [Source:NCBI gene;Acc:423196]
89. STMN1 ENSGALG00000001475 487.00 2071.34 stathmin 1 [Source:NCBI gene;Acc:396057]
90. RAN ENSGALG00000002569 483.00 2054.33 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
91. RPS6 ENSGALG00000015082 477.00 2028.81 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
92. EIF5A2 ENSGALG00000009309 446.00 1896.96 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
93. RPS20 ENSGALG00000014432 434.00 1845.92 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
94. DYL1 ENSGALG00000007153 423.00 1799.13 dynein light chain 1 cytoplasmic [Source:NCBI gene;Acc:427708]
95. PKM ENSGALG00000001992 421.00 1790.63 pyruvate kinase M1/2 [Source:NCBI gene;Acc:396456]
96. RPL22 ENSGALG00000000719 417.00 1773.62 ribosomal protein L22 [Source:NCBI gene;Acc:373937]
97. RPL31 ENSGALG00000016775 415.00 1765.11 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
98. ATP5G3 413.00 1756.60 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
99. SLC25A6_1 ENSGALG00000016691 409.00 1739.59 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
100. CRHOA CRHOA 406.00 1726.83
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA