Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_aorta, section s41.

Sample reads: 235,768. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 5383.00 22834.87
2. RPLP0 ENSGALG00000023294 3577.00 15173.75 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
3. gga-mir-3533 ENSGALG00000027736 2687.00 11398.34 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
4. RPL35A ENSGALG00000007611, ENSGALG00000041230 2474.00 10494.79 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
5. RPS29 ENSGALG00000012229 2343.00 9939.08 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
6. RPS10 ENSGALG00000002813 2338.00 9917.87 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
7. RPS15 ENSGALG00000015195 2321.00 9845.76 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
8. HBZ ENSGALG00000023740 2148.00 9111.89 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
9. GAPDH ENSGALG00000014442 2115.00 8971.90 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
10. gga-mir-3527 gga-mir-3527 2049.00 8691.93
11. HBG1 HBG1 1971.00 8361.05
12. RPL4 ENSGALG00000007711 1964.00 8331.35 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
13. MT-ATP6 MT-ATP6 1777.00 7538.09
14. RPS28 ENSGALG00000024398 1758.00 7457.49 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
15. RPS2 ENSGALG00000005490 1729.00 7334.48 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
16. EEF1A EEF1A 1666.00 7067.23
17. RPL13 ENSGALG00000006179 1644.00 6973.90 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
18. PPIA ENSGALG00000028600 1642.00 6965.42 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
19. RPL23A ENSGALG00000003966 1629.00 6910.27 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
20. RPS4 RPS4 1620.00 6872.09
21. RPS8 ENSGALG00000010124 1588.00 6736.35 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
22. RPSA 1583.00 6715.14 ribosomal protein SA
23. RPL15 ENSGALG00000011290 1518.00 6439.41 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
24. RPLP1 ENSGALG00000030878 1341.00 5688.57 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
25. HBE 1244.00 5277.09 hemoglobin subunit epsilon
26. RPL27A ENSGALG00000005948 1244.00 5277.09 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
27. MT-ND6 MT-ND6 1242.00 5268.61
28. RPL19 ENSGALG00000001658 1229.00 5213.46 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
29. RPL7A ENSGALG00000003197 1198.00 5081.96 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
30. RPL24 ENSGALG00000015339 1190.00 5048.02 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
31. RPS14 ENSGALG00000004588 1171.00 4967.42 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
32. RPL12 ENSGALG00000008806 1152.00 4886.82 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
33. RPL29 ENSGALG00000026978 1147.00 4865.61 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
34. RPS21 ENSGALG00000005338 1147.00 4865.61 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
35. RPL6 ENSGALG00000004818 1132.00 4801.98 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
36. MT-ND1 MT-ND1 1120.00 4751.08
37. RPL35 ENSGALG00000035677 1103.00 4678.96 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
38. RPS15A ENSGALG00000006771 1077.00 4568.67 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
39. MT-ND5 MT-ND5 1062.00 4505.04
40. RPL18A 1036.00 4394.75 ribosomal protein L18a
41. RPL36 ENSGALG00000000474 1031.00 4373.54 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
42. RPS12 ENSGALG00000013990 1006.00 4267.49 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
43. RPL38 ENSGALG00000001465 979.00 4152.95 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
44. RPL26 RPL26 970.00 4114.77
45. SNRPD1 ENSGALG00000041334 970.00 4114.77 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
46. RPS11 ENSGALG00000017299 958.00 4063.87 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
47. MT-ND3 MT-ND3 953.00 4042.66
48. RPS23 ENSGALG00000015617 948.00 4021.45 ribosomal protein S23
49. RPL32 ENSGALG00000027142 943.00 4000.24 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
50. RPS16 ENSGALG00000026490 939.00 3983.27 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
51. RPL27 ENSGALG00000002837 899.00 3813.59 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
52. RPL8 ENSGALG00000016232 892.00 3783.89 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
53. MT-ND4 MT-ND4 878.00 3724.51
54. RPS7 ENSGALG00000016392 822.00 3486.95 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
55. GNB2L1 ENSGALG00000000122 810.00 3436.05 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
56. RPS27A ENSGALG00000036790 793.00 3363.93 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
57. RPL36AL ENSGALG00000004952 771.00 3270.61 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
58. RPL14 ENSGALG00000043379 768.00 3257.88 ribosomal protein L14
59. RPS3A ENSGALG00000010077 761.00 3228.19 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
60. TCEB3 ENSGALG00000034625 756.00 3206.98 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
61. RPL21 ENSGALG00000027035 733.00 3109.41 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
62. RPL7 ENSGALG00000035252 728.00 3088.20 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
63. ALDOC ENSGALG00000026077 722.00 3062.75 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
64. MT-CYB MT-CYB 713.00 3024.57
65. RPL5 ENSGALG00000005922 701.00 2973.67 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
66. ENSGALG00000028992 ENSGALG00000028992 699.00 2965.18
67. RPS6 ENSGALG00000015082 699.00 2965.18 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
68. CIRBP ENSGALG00000030918 693.00 2939.73 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
69. ENSGALG00000028649 ENSGALG00000028649 660.00 2799.74
70. NME2 ENSGALG00000002932 659.00 2795.50 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
71. MDK ENSGALG00000008367 652.00 2765.81 midkine [Source:NCBI gene;Acc:423196]
72. RPL37A ENSGALG00000011472 652.00 2765.81 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
73. RPS25 ENSGALG00000007699 648.00 2748.84 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
74. RPS3 ENSGALG00000017330 626.00 2655.51 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
75. RPL10A ENSGALG00000002644 625.00 2651.27 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
76. UBB ENSGALG00000004509 623.00 2642.79 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
77. RPS24 ENSGALG00000004871 611.00 2591.88 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
78. MT-CO1 MT-CO1 589.00 2498.56
79. ENO1 ENSGALG00000002377 585.00 2481.59 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
80. RPS13 ENSGALG00000006096 579.00 2456.14 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
81. TMSB4X ENSGALG00000026383 572.00 2426.44 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
82. PRDX1 ENSGALG00000010243 551.00 2337.36 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
83. RPS17 ENSGALG00000002157 551.00 2337.36 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
84. RPS20 ENSGALG00000014432 541.00 2294.94 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
85. HMGN2 HMGN2 533.00 2261.00
86. ANP32B ENSGALG00000037483 531.00 2252.52 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
87. EEF1D 528.00 2239.79 eukaryotic translation elongation factor 1 delta, transcript variant X13
88. FTH FTH 526.00 2231.31
89. STMN1 ENSGALG00000001475 504.00 2137.98 stathmin 1 [Source:NCBI gene;Acc:396057]
90. RPL23 ENSGALG00000001634 494.00 2095.56 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
91. PKM ENSGALG00000001992 475.00 2014.97 pyruvate kinase M1/2 [Source:NCBI gene;Acc:396456]
92. ZNF593 ENSGALG00000000542 468.00 1985.27 zinc finger protein 593 [Source:NCBI gene;Acc:419549]
93. CRHOA CRHOA 456.00 1934.37
94. LDHB ENSGALG00000035836 453.00 1921.64 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
95. EIF5A2 ENSGALG00000009309 449.00 1904.67 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
96. ENSGALG00000022570 ENSGALG00000022570 444.00 1883.46
97. RPL37 ENSGALG00000014833 442.00 1874.98 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
98. RPL31 ENSGALG00000016775 441.00 1870.74 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
99. ATP5G3 434.00 1841.04 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
100. RAN ENSGALG00000002569 412.00 1747.72 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA