Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_aorta, section s40.

Sample reads: 235,513. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 6565.00 27878.75
2. RPLP0 ENSGALG00000023294 2927.00 12429.72 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
3. gga-mir-3533 ENSGALG00000027736 2889.00 12268.35 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
4. gga-mir-3527 gga-mir-3527 2378.00 10098.35
5. RPL35A ENSGALG00000007611, ENSGALG00000041230 2225.00 9448.62 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
6. RPS15 ENSGALG00000015195 2185.00 9278.76 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
7. RPS10 ENSGALG00000002813 2107.00 8947.53 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
8. MT-ATP6 MT-ATP6 2041.00 8667.26
9. RPS29 ENSGALG00000012229 1982.00 8416.71 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
10. EEF1A EEF1A 1916.00 8136.43
11. GAPDH ENSGALG00000014442 1913.00 8123.69 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
12. RPL4 ENSGALG00000007711 1834.00 7788.21 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
13. HBZ ENSGALG00000023740 1752.00 7440.00 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
14. HBG1 HBG1 1657.00 7036.57
15. MT-ND5 MT-ND5 1651.00 7011.09
16. RPL13 ENSGALG00000006179 1611.00 6841.23 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
17. RPS2 ENSGALG00000005490 1497.00 6357.12 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
18. MT-ND1 MT-ND1 1492.00 6335.89
19. RPS4 RPS4 1445.00 6136.30
20. PPIA ENSGALG00000028600 1425.00 6051.37 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
21. RPL15 ENSGALG00000011290 1413.00 6000.41 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
22. RPS8 ENSGALG00000010124 1408.00 5979.17 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
23. RPSA 1366.00 5800.82 ribosomal protein SA
24. RPL23A ENSGALG00000003966 1365.00 5796.57 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
25. RPS28 ENSGALG00000024398 1332.00 5656.44 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
26. MT-ND4 MT-ND4 1257.00 5337.94
27. RPLP1 ENSGALG00000030878 1252.00 5316.71 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
28. RPL19 ENSGALG00000001658 1189.00 5049.18 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
29. RPL35 ENSGALG00000035677 1150.00 4883.56 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
30. MT-ND3 MT-ND3 1131.00 4802.87
31. RPL6 ENSGALG00000004818 1110.00 4713.70 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
32. HBE 1067.00 4531.09 hemoglobin subunit epsilon
33. RPS14 ENSGALG00000004588 1056.00 4484.38 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
34. RPS21 ENSGALG00000005338 1037.00 4403.70 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
35. MT-ND6 MT-ND6 1032.00 4382.46
36. RPL24 ENSGALG00000015339 1029.00 4369.72 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
37. RPL32 ENSGALG00000027142 1020.00 4331.50 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
38. RPL7A ENSGALG00000003197 1013.00 4301.78 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
39. RPL27A ENSGALG00000005948 995.00 4225.34 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
40. RPS15A ENSGALG00000006771 980.00 4161.64 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
41. RPL12 ENSGALG00000008806 941.00 3996.03 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
42. MT-CYB MT-CYB 940.00 3991.78
43. SNRPD1 ENSGALG00000041334 930.00 3949.31 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
44. RPL27 ENSGALG00000002837 920.00 3906.85 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
45. RPL18A 912.00 3872.87 ribosomal protein L18a
46. RPL36 ENSGALG00000000474 910.00 3864.38 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
47. RPS11 ENSGALG00000017299 910.00 3864.38 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
48. RPS23 ENSGALG00000015617 879.00 3732.74 ribosomal protein S23
49. RPL29 ENSGALG00000026978 878.00 3728.49 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
50. RPS12 ENSGALG00000013990 876.00 3720.00 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
51. RPL38 ENSGALG00000001465 871.00 3698.77 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
52. MDK ENSGALG00000008367 806.00 3422.74 midkine [Source:NCBI gene;Acc:423196]
53. RPS3A ENSGALG00000010077 774.00 3286.85 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
54. RPS7 ENSGALG00000016392 763.00 3240.14 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
55. NME2 ENSGALG00000002932 749.00 3180.68 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
56. RPL36AL ENSGALG00000004952 748.00 3176.44 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
57. RPS16 ENSGALG00000026490 747.00 3172.19 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
58. RPS27A ENSGALG00000036790 740.00 3142.46 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
59. GNB2L1 ENSGALG00000000122 739.00 3138.22 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
60. RPL37A ENSGALG00000011472 739.00 3138.22 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
61. RPL8 ENSGALG00000016232 737.00 3129.72 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
62. ANP32B ENSGALG00000037483 734.00 3116.98 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
63. RPL26 RPL26 730.00 3100.00
64. RPL14 ENSGALG00000043379 724.00 3074.52 ribosomal protein L14
65. CIRBP ENSGALG00000030918 720.00 3057.53 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
66. RPL7 ENSGALG00000035252 714.00 3032.05 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
67. RPL21 ENSGALG00000027035 708.00 3006.57 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
68. RPL5 ENSGALG00000005922 652.00 2768.77 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
69. MT-CO1 MT-CO1 643.00 2730.55
70. HMGN2 HMGN2 632.00 2683.83
71. TCEB3 ENSGALG00000034625 616.00 2615.89 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
72. ALDOC ENSGALG00000026077 604.00 2564.93 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
73. RPS25 ENSGALG00000007699 601.00 2552.19 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
74. RPS13 ENSGALG00000006096 581.00 2467.26 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
75. UBB ENSGALG00000004509 579.00 2458.77 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
76. PRDX1 ENSGALG00000010243 571.00 2424.79 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
77. TMSB4X ENSGALG00000026383 565.00 2399.31 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
78. ENSGALG00000028649 ENSGALG00000028649 552.00 2344.11
79. EIF5A2 ENSGALG00000009309 544.00 2310.14 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
80. RPS17 ENSGALG00000002157 541.00 2297.40 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
81. RPL23 ENSGALG00000001634 539.00 2288.90 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
82. RPS3 ENSGALG00000017330 536.00 2276.16 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
83. ENSGALG00000028992 ENSGALG00000028992 522.00 2216.71
84. ENO1 ENSGALG00000002377 517.00 2195.48 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
85. RPL10A ENSGALG00000002644 511.00 2170.00 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
86. RPS6 ENSGALG00000015082 510.00 2165.75 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
87. MMP15 ENSGALG00000038758 507.00 2153.01 matrix metallopeptidase 15 [Source:HGNC Symbol;Acc:HGNC:7161]
88. EEF1D 503.00 2136.03 eukaryotic translation elongation factor 1 delta, transcript variant X13
89. LDHB ENSGALG00000035836 499.00 2119.04 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
90. RPS24 ENSGALG00000004871 494.00 2097.81 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
91. PKM ENSGALG00000001992 482.00 2046.85 pyruvate kinase M1/2 [Source:NCBI gene;Acc:396456]
92. RPS20 ENSGALG00000014432 481.00 2042.60 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
93. ATP5G3 472.00 2004.38 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
94. FTH FTH 456.00 1936.44
95. CRHOA CRHOA 447.00 1898.22
96. STMN1 ENSGALG00000001475 442.00 1876.99 stathmin 1 [Source:NCBI gene;Acc:396057]
97. ENSGALG00000018384 ENSGALG00000018384 405.00 1719.86
98. RPL31 ENSGALG00000016775 404.00 1715.62 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
99. RPL37 ENSGALG00000014833 394.00 1673.15 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
100. SLC25A6_1 ENSGALG00000016691 385.00 1634.93 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA