Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_aorta, section s4.

Sample reads: 235,113. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 5762.00 24509.66
2. RPLP0 ENSGALG00000023294 3302.00 14045.62 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
3. RPL35A ENSGALG00000007611, ENSGALG00000041230 2304.00 9800.46 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
4. RPS29 ENSGALG00000012229 2198.00 9349.57 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
5. RPS10 ENSGALG00000002813 2181.00 9277.26 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
6. GAPDH ENSGALG00000014442 2176.00 9255.99 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
7. MT-ATP6 MT-ATP6 2176.00 9255.99
8. gga-mir-3527 gga-mir-3527 2169.00 9226.21
9. EEF1A EEF1A 2130.00 9060.32
10. RPS15 ENSGALG00000015195 2063.00 8775.33 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
11. gga-mir-3533 ENSGALG00000027736 2052.00 8728.53 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
12. RPL4 ENSGALG00000007711 2030.00 8634.95 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
13. MT-ND5 MT-ND5 1754.00 7460.94
14. RPS2 ENSGALG00000005490 1709.00 7269.53 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
15. MT-ND1 MT-ND1 1647.00 7005.80
16. RPL23A ENSGALG00000003966 1621.00 6895.20 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
17. RPL13 ENSGALG00000006179 1583.00 6733.56 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
18. RPS28 ENSGALG00000024398 1545.00 6571.92 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
19. RPL15 ENSGALG00000011290 1458.00 6201.85 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
20. PPIA ENSGALG00000028600 1453.00 6180.59 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
21. RPSA 1393.00 5925.37 ribosomal protein SA
22. RPS4 RPS4 1353.00 5755.22
23. RPLP1 ENSGALG00000030878 1307.00 5559.55 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
24. RPL19 ENSGALG00000001658 1278.00 5436.19 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
25. RPL35 ENSGALG00000035677 1263.00 5372.39 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
26. RPS8 ENSGALG00000010124 1248.00 5308.58 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
27. RPL7A ENSGALG00000003197 1228.00 5223.51 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
28. RPS14 ENSGALG00000004588 1219.00 5185.23 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
29. RPL27A ENSGALG00000005948 1203.00 5117.17 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
30. RPL24 ENSGALG00000015339 1169.00 4972.54 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
31. RPL32 ENSGALG00000027142 1168.00 4968.29 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
32. RPL6 ENSGALG00000004818 1133.00 4819.41 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
33. RPS12 ENSGALG00000013990 1094.00 4653.52 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
34. ENSGALG00000018384 ENSGALG00000018384 1089.00 4632.25
35. RPS21 ENSGALG00000005338 1075.00 4572.70 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
36. RPS15A ENSGALG00000006771 1067.00 4538.67 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
37. RPL29 ENSGALG00000026978 1057.00 4496.13 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
38. RPL26 RPL26 1045.00 4445.09
39. MT-ND4 MT-ND4 1041.00 4428.07
40. RPS11 ENSGALG00000017299 1021.00 4343.00 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
41. RPL27 ENSGALG00000002837 1019.00 4334.49 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
42. GNB2L1 ENSGALG00000000122 1017.00 4325.98 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
43. RPL38 ENSGALG00000001465 1004.00 4270.69 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
44. RPL12 ENSGALG00000008806 1002.00 4262.18 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
45. RPS27A ENSGALG00000036790 993.00 4223.90 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
46. SNRPD1 ENSGALG00000041334 974.00 4143.08 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
47. MT-ND3 MT-ND3 951.00 4045.24
48. RPL36 ENSGALG00000000474 949.00 4036.73 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
49. RPL18A 922.00 3921.89 ribosomal protein L18a
50. ANP32B ENSGALG00000037483 916.00 3896.36 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
51. RPL7 ENSGALG00000035252 910.00 3870.84 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
52. MT-CYB MT-CYB 895.00 3807.04
53. HBZ ENSGALG00000023740 875.00 3721.96 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
54. NME2 ENSGALG00000002932 864.00 3675.17 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
55. RPL8 ENSGALG00000016232 854.00 3632.64 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
56. RPS16 ENSGALG00000026490 840.00 3573.08 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
57. RPS7 ENSGALG00000016392 829.00 3526.29 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
58. TCEB3 ENSGALG00000034625 824.00 3505.03 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
59. RPS23 ENSGALG00000015617 787.00 3347.64 ribosomal protein S23
60. RPS3A ENSGALG00000010077 782.00 3326.37 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
61. ENO1 ENSGALG00000002377 779.00 3313.61 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
62. MT-ND6 MT-ND6 734.00 3122.20
63. RPL21 ENSGALG00000027035 732.00 3113.69 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
64. LDHB ENSGALG00000035836 728.00 3096.67 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
65. RPS25 ENSGALG00000007699 725.00 3083.91 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
66. ALDOC ENSGALG00000026077 718.00 3054.14 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
67. RPL36AL ENSGALG00000004952 718.00 3054.14 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
68. MT-CO1 MT-CO1 705.00 2998.84
69. RPL5 ENSGALG00000005922 702.00 2986.08 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
70. RPL14 ENSGALG00000043379 692.00 2943.54 ribosomal protein L14
71. CIRBP ENSGALG00000030918 670.00 2849.96 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
72. HBG1 HBG1 663.00 2820.18
73. RPS13 ENSGALG00000006096 644.00 2739.36 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
74. RPS17 ENSGALG00000002157 643.00 2735.11 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
75. RPL10A ENSGALG00000002644 630.00 2679.81 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
76. RPS6 ENSGALG00000015082 629.00 2675.56 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
77. MDK ENSGALG00000008367 626.00 2662.80 midkine [Source:NCBI gene;Acc:423196]
78. RPS3 ENSGALG00000017330 610.00 2594.74 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
79. PKM ENSGALG00000001992 606.00 2577.73 pyruvate kinase M1/2 [Source:NCBI gene;Acc:396456]
80. RPS20 ENSGALG00000014432 605.00 2573.47 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
81. RPL37A ENSGALG00000011472 594.00 2526.68 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
82. ENSGALG00000018386 ENSGALG00000018386 574.00 2441.61
83. ATP5G3 570.00 2424.59 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
84. EIF5A2 ENSGALG00000009309 570.00 2424.59 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
85. ENSGALG00000028992 ENSGALG00000028992 566.00 2407.58
86. RPL23 ENSGALG00000001634 565.00 2403.32 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
87. RPS24 ENSGALG00000004871 544.00 2314.00 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
88. HMGN2 HMGN2 541.00 2301.24
89. EEF1D 528.00 2245.94 eukaryotic translation elongation factor 1 delta, transcript variant X13
90. FTH FTH 515.00 2190.64
91. PRDX1 ENSGALG00000010243 508.00 2160.87 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
92. UBB ENSGALG00000004509 501.00 2131.09 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
93. STMN1 ENSGALG00000001475 497.00 2114.07 stathmin 1 [Source:NCBI gene;Acc:396057]
94. TMSB4X ENSGALG00000026383 482.00 2050.27 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
95. ENSGALG00000028649 ENSGALG00000028649 471.00 2003.48
96. HBE 438.00 1863.11 hemoglobin subunit epsilon
97. CHCHD2 ENSGALG00000002495 421.00 1790.80 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:NCBI gene;Acc:417544]
98. MT-ND2 MT-ND2 404.00 1718.48
99. RAN ENSGALG00000002569 399.00 1697.22 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
100. RPL31 ENSGALG00000016775 389.00 1654.68 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA