Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_aorta, section s35.

Sample reads: 235,640. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 5081.00 21564.84
2. RPLP0 ENSGALG00000023294 3144.00 13343.80 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
3. HBZ ENSGALG00000023740 2726.00 11569.72 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
4. gga-mir-3533 ENSGALG00000027736 2690.00 11416.93 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
5. HBG1 HBG1 2392.00 10152.15
6. RPS10 ENSGALG00000002813 2096.00 8895.87 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
7. RPS15 ENSGALG00000015195 2031.00 8619.99 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
8. RPS29 ENSGALG00000012229 2021.00 8577.55 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
9. RPL4 ENSGALG00000007711 2013.00 8543.60 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
10. gga-mir-3527 gga-mir-3527 1949.00 8271.97
11. GAPDH ENSGALG00000014442 1946.00 8259.24 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
12. RPL35A ENSGALG00000007611, ENSGALG00000041230 1942.00 8242.26 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
13. EEF1A EEF1A 1936.00 8216.79
14. RPL13 ENSGALG00000006179 1807.00 7669.29 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
15. MT-ATP6 MT-ATP6 1721.00 7304.29
16. RPS2 ENSGALG00000005490 1720.00 7300.04 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
17. HBE 1594.00 6765.27 hemoglobin subunit epsilon
18. RPL23A ENSGALG00000003966 1555.00 6599.75 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
19. RPSA 1497.00 6353.59 ribosomal protein SA
20. RPL15 ENSGALG00000011290 1494.00 6340.85 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
21. RPL35 ENSGALG00000035677 1420.00 6026.78 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
22. RPS4 RPS4 1402.00 5950.39
23. PPIA ENSGALG00000028600 1371.00 5818.81 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
24. MT-ND1 MT-ND1 1320.00 5602.36
25. MT-ND3 MT-ND3 1266.00 5373.17
26. RPS8 ENSGALG00000010124 1240.00 5262.82 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
27. MT-ND5 MT-ND5 1217.00 5165.21
28. RPL24 ENSGALG00000015339 1181.00 5012.41 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
29. RPS14 ENSGALG00000004588 1153.00 4893.58 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
30. RPS28 ENSGALG00000024398 1153.00 4893.58 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
31. RPL6 ENSGALG00000004818 1145.00 4859.62 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
32. RPL19 ENSGALG00000001658 1142.00 4846.89 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
33. RPL27A ENSGALG00000005948 1120.00 4753.52 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
34. RPLP1 ENSGALG00000030878 1108.00 4702.59 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
35. RPL7A ENSGALG00000003197 1075.00 4562.53 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
36. RPS21 ENSGALG00000005338 1053.00 4469.16 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
37. RPS15A ENSGALG00000006771 1014.00 4303.63 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
38. MT-ND4 MT-ND4 990.00 4201.77
39. SNRPD1 ENSGALG00000041334 980.00 4159.33 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
40. RPL27 ENSGALG00000002837 966.00 4099.91 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
41. RPL29 ENSGALG00000026978 950.00 4032.00 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
42. RPS11 ENSGALG00000017299 947.00 4019.27 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
43. RPL12 ENSGALG00000008806 933.00 3959.85 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
44. RPL36 ENSGALG00000000474 930.00 3947.12 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
45. RPL32 ENSGALG00000027142 928.00 3938.63 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
46. RPS23 ENSGALG00000015617 909.00 3857.99 ribosomal protein S23
47. RPL37A ENSGALG00000011472 907.00 3849.50 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
48. GNB2L1 ENSGALG00000000122 901.00 3824.03 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
49. RPS12 ENSGALG00000013990 899.00 3815.55 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
50. RPL38 ENSGALG00000001465 852.00 3616.07 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
51. MT-CYB MT-CYB 843.00 3577.87
52. RPL18A 826.00 3505.72 ribosomal protein L18a
53. RPS27A ENSGALG00000036790 799.00 3391.13 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
54. RPL14 ENSGALG00000043379 783.00 3323.22 ribosomal protein L14
55. RPS7 ENSGALG00000016392 770.00 3268.04 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
56. RPS3A ENSGALG00000010077 758.00 3217.11 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
57. RPL7 ENSGALG00000035252 752.00 3191.65 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
58. RPL8 ENSGALG00000016232 751.00 3187.40 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
59. CIRBP ENSGALG00000030918 748.00 3174.67 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
60. RPL26 RPL26 747.00 3170.43
61. ALDOC ENSGALG00000026077 743.00 3153.45 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
62. RPS16 ENSGALG00000026490 729.00 3094.03 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
63. MT-ND6 MT-ND6 726.00 3081.30
64. TCEB3 ENSGALG00000034625 724.00 3072.81 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
65. MDK ENSGALG00000008367 714.00 3030.37 midkine [Source:NCBI gene;Acc:423196]
66. NME2 ENSGALG00000002932 713.00 3026.12 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
67. RPL36AL ENSGALG00000004952 713.00 3026.12 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
68. ANP32B ENSGALG00000037483 698.00 2962.46 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
69. RPL21 ENSGALG00000027035 669.00 2839.38 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
70. RPL5 ENSGALG00000005922 660.00 2801.18 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
71. HMGN2 HMGN2 618.00 2622.92
72. UBB ENSGALG00000004509 613.00 2601.70 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
73. PRDX1 ENSGALG00000010243 611.00 2593.21 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
74. TMSB4X ENSGALG00000026383 591.00 2508.33 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
75. STMN1 ENSGALG00000001475 585.00 2482.86 stathmin 1 [Source:NCBI gene;Acc:396057]
76. RPS25 ENSGALG00000007699 572.00 2427.69 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
77. MT-CO1 MT-CO1 558.00 2368.27
78. RPL23 ENSGALG00000001634 550.00 2334.32 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
79. RPS17 ENSGALG00000002157 549.00 2330.07 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
80. RPS13 ENSGALG00000006096 547.00 2321.58 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
81. RPS24 ENSGALG00000004871 545.00 2313.10 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
82. ENO1 ENSGALG00000002377 541.00 2296.12 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
83. RPS3 ENSGALG00000017330 534.00 2266.41 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
84. EEF1D 532.00 2257.92 eukaryotic translation elongation factor 1 delta, transcript variant X13
85. FTH FTH 532.00 2257.92
86. RPL10A ENSGALG00000002644 509.00 2160.30 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
87. LDHB ENSGALG00000035836 497.00 2109.37 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
88. PKM ENSGALG00000001992 487.00 2066.93 pyruvate kinase M1/2 [Source:NCBI gene;Acc:396456]
89. MMP15 ENSGALG00000038758 478.00 2028.73 matrix metallopeptidase 15 [Source:HGNC Symbol;Acc:HGNC:7161]
90. ENSGALG00000028992 ENSGALG00000028992 468.00 1986.29
91. ATP5G3 467.00 1982.05 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
92. RPS20 ENSGALG00000014432 467.00 1982.05 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
93. ENSGALG00000028649 ENSGALG00000028649 444.00 1884.43
94. RAN ENSGALG00000002569 438.00 1858.96 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
95. RPL37 ENSGALG00000014833 435.00 1846.23 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
96. RPS6 ENSGALG00000015082 433.00 1837.74 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
97. CRHOA CRHOA 423.00 1795.30
98. EIF5A2 ENSGALG00000009309 414.00 1757.10 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
99. SLC25A6_1 ENSGALG00000016691 397.00 1684.95 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
100. ZNF593 ENSGALG00000000542 377.00 1600.07 zinc finger protein 593 [Source:NCBI gene;Acc:419549]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA