Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_aorta, section s3.

Sample reads: 235,297. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4901.00 20829.70
2. RPLP0 ENSGALG00000023294 3144.00 13362.29 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
3. RPL35A ENSGALG00000007611, ENSGALG00000041230 2683.00 11403.00 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
4. gga-mir-3533 ENSGALG00000027736 2563.00 10892.99 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
5. RPS10 ENSGALG00000002813 2503.00 10637.98 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
6. RPL4 ENSGALG00000007711 2345.00 9966.47 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
7. RPS15 ENSGALG00000015195 2216.00 9418.20 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
8. RPS29 ENSGALG00000012229 2174.00 9239.70 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
9. EEF1A EEF1A 2158.00 9171.70
10. GAPDH ENSGALG00000014442 2005.00 8521.44 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
11. RPL13 ENSGALG00000006179 1987.00 8444.93 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
12. RPL15 ENSGALG00000011290 1918.00 8151.68 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
13. RPS2 ENSGALG00000005490 1906.00 8100.68 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
14. gga-mir-3527 gga-mir-3527 1838.00 7811.67
15. RPL23A ENSGALG00000003966 1782.00 7573.66 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
16. RPS4 RPS4 1661.00 7059.40
17. RPL35 ENSGALG00000035677 1584.00 6732.15 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
18. RPS8 ENSGALG00000010124 1582.00 6723.65 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
19. RPL32 ENSGALG00000027142 1480.00 6290.14 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
20. RPSA 1465.00 6226.39 ribosomal protein SA
21. RPL19 ENSGALG00000001658 1462.00 6213.64 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
22. RPS14 ENSGALG00000004588 1436.00 6103.13 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
23. MT-ATP6 MT-ATP6 1435.00 6098.88
24. RPLP1 ENSGALG00000030878 1378.00 5856.63 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
25. RPL27A ENSGALG00000005948 1299.00 5520.87 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
26. RPL24 ENSGALG00000015339 1285.00 5461.37 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
27. RPL6 ENSGALG00000004818 1268.00 5389.12 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
28. RPL7A ENSGALG00000003197 1257.00 5342.37 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
29. RPL18A 1250.00 5312.62 ribosomal protein L18a
30. RPS15A ENSGALG00000006771 1209.00 5138.36 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
31. RPS28 ENSGALG00000024398 1206.00 5125.61 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
32. RPL29 ENSGALG00000026978 1132.00 4811.10 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
33. MT-ND1 MT-ND1 1073.00 4560.35
34. RPS21 ENSGALG00000005338 1067.00 4534.85 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
35. SNRPD1 ENSGALG00000041334 1036.00 4403.10 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
36. MT-ND3 MT-ND3 1015.00 4313.84
37. RPS12 ENSGALG00000013990 998.00 4241.59 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
38. RPL36 ENSGALG00000000474 993.00 4220.34 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
39. RPS23 ENSGALG00000015617 991.00 4211.84 ribosomal protein S23
40. RPL12 ENSGALG00000008806 976.00 4148.09 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
41. RPL27 ENSGALG00000002837 972.00 4131.09 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
42. PPIA ENSGALG00000028600 952.00 4046.09 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
43. RPL14 ENSGALG00000043379 951.00 4041.84 ribosomal protein L14
44. RPL26 RPL26 948.00 4029.09
45. RPS7 ENSGALG00000016392 930.00 3952.59 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
46. RPL38 ENSGALG00000001465 923.00 3922.84 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
47. RPS27A ENSGALG00000036790 920.00 3910.09 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
48. CIRBP ENSGALG00000030918 917.00 3897.33 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
49. MT-ND5 MT-ND5 914.00 3884.58
50. RPS3A ENSGALG00000010077 910.00 3867.58 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
51. GNB2L1 ENSGALG00000000122 904.00 3842.08 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
52. RPS16 ENSGALG00000026490 904.00 3842.08 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
53. RPS11 ENSGALG00000017299 903.00 3837.83 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
54. RPL7 ENSGALG00000035252 892.00 3791.08 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
55. MT-ND4 MT-ND4 867.00 3684.83
56. RPL5 ENSGALG00000005922 867.00 3684.83 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
57. ENO1 ENSGALG00000002377 863.00 3667.83 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
58. RPL36AL ENSGALG00000004952 863.00 3667.83 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
59. RPL8 ENSGALG00000016232 828.00 3519.08 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
60. NME2 ENSGALG00000002932 809.00 3438.32 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
61. LDHB ENSGALG00000035836 794.00 3374.57 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
62. TCEB3 ENSGALG00000034625 754.00 3204.57 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
63. RPS17 ENSGALG00000002157 743.00 3157.82 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
64. RPL10A ENSGALG00000002644 730.00 3102.57 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
65. ANP32B ENSGALG00000037483 720.00 3060.07 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
66. HBZ ENSGALG00000023740 715.00 3038.82 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
67. RPS13 ENSGALG00000006096 706.00 3000.57 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
68. RPL23 ENSGALG00000001634 686.00 2915.56 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
69. RPL21 ENSGALG00000027035 658.00 2796.56 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
70. RPL37A ENSGALG00000011472 655.00 2783.81 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
71. RPS3 ENSGALG00000017330 638.00 2711.56 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
72. RPS25 ENSGALG00000007699 628.00 2669.06 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
73. HBG1 HBG1 627.00 2664.81
74. PRDX1 ENSGALG00000010243 624.00 2652.06 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
75. ENSGALG00000028992 ENSGALG00000028992 603.00 2562.81
76. RPS20 ENSGALG00000014432 601.00 2554.31 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
77. EIF5A2 ENSGALG00000009309 600.00 2550.06 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
78. RPS24 ENSGALG00000004871 600.00 2550.06 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
79. RPS6 ENSGALG00000015082 599.00 2545.81 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
80. MT-CYB MT-CYB 596.00 2533.06
81. TMSB4X ENSGALG00000026383 584.00 2482.05 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
82. FTH FTH 575.00 2443.80
83. PKM ENSGALG00000001992 572.00 2431.05 pyruvate kinase M1/2 [Source:NCBI gene;Acc:396456]
84. RPL31 ENSGALG00000016775 562.00 2388.55 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
85. MDK ENSGALG00000008367 556.00 2363.05 midkine [Source:NCBI gene;Acc:423196]
86. ALDOC ENSGALG00000026077 531.00 2256.80 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
87. EEF1D 531.00 2256.80 eukaryotic translation elongation factor 1 delta, transcript variant X13
88. MT-CO1 MT-CO1 525.00 2231.30
89. UBB ENSGALG00000004509 515.00 2188.80 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
90. RAN ENSGALG00000002569 502.00 2133.55 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
91. STMN1 ENSGALG00000001475 471.00 2001.79 stathmin 1 [Source:NCBI gene;Acc:396057]
92. ATP5G3 459.00 1950.79 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
93. RPL37 ENSGALG00000014833 429.00 1823.29 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
94. HMGN2 HMGN2 426.00 1810.54
95. HBE 389.00 1653.29 hemoglobin subunit epsilon
96. RPL22 ENSGALG00000000719 386.00 1640.54 ribosomal protein L22 [Source:NCBI gene;Acc:373937]
97. PRELID1 ENSGALG00000002990 381.00 1619.29 PRELI domain containing 1 [Source:NCBI gene;Acc:395819]
98. DYL1 ENSGALG00000007153 378.00 1606.53 dynein light chain 1 cytoplasmic [Source:NCBI gene;Acc:427708]
99. ATP5L ENSGALG00000006899 375.00 1593.78 ATP synthase, H+ transporting, mitochondrial Fo complex subunit G
100. CHCHD2 ENSGALG00000002495 369.00 1568.28 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:NCBI gene;Acc:417544]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA