Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_aorta, section s29.

Sample reads: 234,500. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4884.00 20829.51
2. RPLP0 ENSGALG00000023294 2924.00 12470.41 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
3. gga-mir-3533 ENSGALG00000027736 2656.00 11327.43 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
4. gga-mir-3527 gga-mir-3527 2538.00 10824.18
5. RPS10 ENSGALG00000002813 2347.00 10009.60 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
6. RPS29 ENSGALG00000012229 2320.00 9894.45 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
7. RPS15 ENSGALG00000015195 2018.00 8606.46 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
8. MT-ATP6 MT-ATP6 1971.00 8406.01
9. RPL35A ENSGALG00000007611, ENSGALG00000041230 1956.00 8342.04 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
10. GAPDH ENSGALG00000014442 1909.00 8141.59 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
11. EEF1A EEF1A 1855.00 7911.29
12. HBZ ENSGALG00000023740 1780.00 7591.43 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
13. RPL4 ENSGALG00000007711 1731.00 7382.45 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
14. RPL13 ENSGALG00000006179 1688.00 7199.06 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
15. MT-ND1 MT-ND1 1619.00 6904.79
16. RPL23A ENSGALG00000003966 1534.00 6542.28 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
17. RPSA 1494.00 6371.68 ribosomal protein SA
18. RPS2 ENSGALG00000005490 1484.00 6329.03 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
19. RPL15 ENSGALG00000011290 1420.00 6056.08 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
20. RPS8 ENSGALG00000010124 1385.00 5906.81 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
21. RPS4 RPS4 1366.00 5825.78
22. MT-ND5 MT-ND5 1360.00 5800.19
23. HBG1 HBG1 1354.00 5774.60
24. MT-ND3 MT-ND3 1329.00 5667.98
25. RPL35 ENSGALG00000035677 1294.00 5518.71 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
26. RPS14 ENSGALG00000004588 1284.00 5476.06 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
27. RPL24 ENSGALG00000015339 1227.00 5232.97 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
28. RPL18A 1209.00 5156.20 ribosomal protein L18a
29. MT-ND4 MT-ND4 1150.00 4904.57
30. PPIA ENSGALG00000028600 1141.00 4866.19 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
31. RPL6 ENSGALG00000004818 1136.00 4844.87 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
32. RPS28 ENSGALG00000024398 1130.00 4819.28 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
33. RPS21 ENSGALG00000005338 1103.00 4704.13 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
34. RPL19 ENSGALG00000001658 1100.00 4691.33 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
35. RPLP1 ENSGALG00000030878 1092.00 4657.21 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
36. RPL32 ENSGALG00000027142 1090.00 4648.68 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
37. RPS15A ENSGALG00000006771 1078.00 4597.51 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
38. RPL29 ENSGALG00000026978 1062.00 4529.27 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
39. RPL7A ENSGALG00000003197 1023.00 4362.94 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
40. HBE 1018.00 4341.61 hemoglobin subunit epsilon
41. RPL27A ENSGALG00000005948 980.00 4179.55 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
42. SNRPD1 ENSGALG00000041334 932.00 3974.84 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
43. RPS11 ENSGALG00000017299 929.00 3962.04 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
44. GNB2L1 ENSGALG00000000122 919.00 3919.39 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
45. MT-CYB MT-CYB 901.00 3842.63
46. RPL27 ENSGALG00000002837 890.00 3795.71 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
47. RPL38 ENSGALG00000001465 874.00 3727.48 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
48. RPL36 ENSGALG00000000474 872.00 3718.95 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
49. RPL12 ENSGALG00000008806 848.00 3616.59 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
50. RPS27A ENSGALG00000036790 848.00 3616.59 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
51. RPS12 ENSGALG00000013990 835.00 3561.15 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
52. CIRBP ENSGALG00000030918 832.00 3548.35 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
53. RPL7 ENSGALG00000035252 828.00 3531.29 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
54. RPS7 ENSGALG00000016392 790.00 3369.23 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
55. RPS16 ENSGALG00000026490 768.00 3275.40 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
56. RPS23 ENSGALG00000015617 758.00 3232.75 ribosomal protein S23
57. RPL8 ENSGALG00000016232 749.00 3194.37 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
58. ANP32B ENSGALG00000037483 746.00 3181.58 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
59. RPL37A ENSGALG00000011472 725.00 3092.01 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
60. RPL21 ENSGALG00000027035 713.00 3040.84 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
61. MDK ENSGALG00000008367 704.00 3002.45 midkine [Source:NCBI gene;Acc:423196]
62. RPL26 RPL26 704.00 3002.45
63. NME2 ENSGALG00000002932 701.00 2989.66 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
64. RPL36AL ENSGALG00000004952 693.00 2955.54 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
65. RPS3A ENSGALG00000010077 686.00 2925.69 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
66. RPS17 ENSGALG00000002157 680.00 2900.10 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
67. MT-CO1 MT-CO1 665.00 2836.12
68. RPS25 ENSGALG00000007699 662.00 2823.33 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
69. RPL5 ENSGALG00000005922 659.00 2810.53 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
70. RPL14 ENSGALG00000043379 649.00 2767.89 ribosomal protein L14
71. MT-ND6 MT-ND6 641.00 2733.77
72. PRDX1 ENSGALG00000010243 634.00 2703.91 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
73. HMGN2 HMGN2 619.00 2639.94
74. TCEB3 ENSGALG00000034625 617.00 2631.41 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
75. ALDOC ENSGALG00000026077 611.00 2605.82 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
76. ENO1 ENSGALG00000002377 611.00 2605.82 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
77. RPS13 ENSGALG00000006096 608.00 2593.03 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
78. RPL23 ENSGALG00000001634 592.00 2524.79 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
79. RPS24 ENSGALG00000004871 588.00 2507.73 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
80. LDHB ENSGALG00000035836 568.00 2422.43 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
81. UBB ENSGALG00000004509 550.00 2345.67 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
82. EEF1D 547.00 2332.87 eukaryotic translation elongation factor 1 delta, transcript variant X13
83. RPL10A ENSGALG00000002644 537.00 2290.22 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
84. RPS3 ENSGALG00000017330 537.00 2290.22 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
85. ATP5G3 532.00 2268.90 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
86. FTH FTH 532.00 2268.90
87. RPS20 ENSGALG00000014432 511.00 2179.34 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
88. TMSB4X ENSGALG00000026383 511.00 2179.34 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
89. EIF5A2 ENSGALG00000009309 497.00 2119.63 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
90. STMN1 ENSGALG00000001475 474.00 2021.54 stathmin 1 [Source:NCBI gene;Acc:396057]
91. ENSGALG00000028649 ENSGALG00000028649 471.00 2008.74
92. RPL37 ENSGALG00000014833 458.00 1953.30 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
93. RPS6 ENSGALG00000015082 456.00 1944.77 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
94. ENSGALG00000028992 ENSGALG00000028992 452.00 1927.71
95. PKM ENSGALG00000001992 421.00 1795.50 pyruvate kinase M1/2 [Source:NCBI gene;Acc:396456]
96. H3-IX H3-IX 406.00 1731.53
97. CRHOA CRHOA 377.00 1607.85
98. CHCHD2 ENSGALG00000002495 374.00 1595.05 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:NCBI gene;Acc:417544]
99. RPL31 ENSGALG00000016775 374.00 1595.05 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
100. SLC25A6_1 ENSGALG00000016691 373.00 1590.79 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA