Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_aorta, section s27.

Sample reads: 234,710. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 5148.00 21936.25
2. RPLP0 ENSGALG00000023294 3430.00 14615.65 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
3. gga-mir-3533 ENSGALG00000027736 2448.00 10431.23 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
4. RPL35A ENSGALG00000007611, ENSGALG00000041230 2303.00 9813.36 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
5. RPS10 ENSGALG00000002813 2101.00 8952.62 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
6. GAPDH ENSGALG00000014442 1969.00 8390.15 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
7. RPS15 ENSGALG00000015195 1963.00 8364.58 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
8. RPL4 ENSGALG00000007711 1919.00 8177.09 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
9. RPS29 ENSGALG00000012229 1884.00 8027.95 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
10. PPIA ENSGALG00000028600 1874.00 7985.34 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
11. gga-mir-3527 gga-mir-3527 1816.00 7738.20
12. EEF1A EEF1A 1757.00 7486.79
13. RPSA 1639.00 6983.98 ribosomal protein SA
14. RPL23A ENSGALG00000003966 1476.00 6289.42 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
15. RPS4 RPS4 1475.00 6285.15
16. RPL13 ENSGALG00000006179 1430.00 6093.40 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
17. MT-ATP6 MT-ATP6 1426.00 6076.36
18. RPL15 ENSGALG00000011290 1404.00 5982.61 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
19. RPLP1 ENSGALG00000030878 1379.00 5876.09 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
20. RPS2 ENSGALG00000005490 1368.00 5829.21 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
21. RPS8 ENSGALG00000010124 1329.00 5663.03 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
22. RPL32 ENSGALG00000027142 1291.00 5501.11 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
23. MT-ND5 MT-ND5 1287.00 5484.06
24. RPL19 ENSGALG00000001658 1273.00 5424.41 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
25. RPS28 ENSGALG00000024398 1201.00 5117.61 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
26. RPL24 ENSGALG00000015339 1165.00 4964.21 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
27. RPS14 ENSGALG00000004588 1138.00 4849.16 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
28. RPL7A ENSGALG00000003197 1114.00 4746.89 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
29. RPS21 ENSGALG00000005338 1082.00 4610.53 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
30. MT-ND3 MT-ND3 1060.00 4516.79
31. RPL27A ENSGALG00000005948 1059.00 4512.53 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
32. RPL6 ENSGALG00000004818 1059.00 4512.53 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
33. RPL35 ENSGALG00000035677 1053.00 4486.96 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
34. HBZ ENSGALG00000023740 1044.00 4448.61 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
35. RPS11 ENSGALG00000017299 1042.00 4440.09 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
36. RPL29 ENSGALG00000026978 1022.00 4354.87 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
37. RPL18A 994.00 4235.55 ribosomal protein L18a
38. HBG1 HBG1 991.00 4222.77
39. SNRPD1 ENSGALG00000041334 991.00 4222.77 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
40. RPS15A ENSGALG00000006771 987.00 4205.73 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
41. RPL27 ENSGALG00000002837 981.00 4180.16 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
42. ENSGALG00000018384 ENSGALG00000018384 963.00 4103.46
43. GNB2L1 ENSGALG00000000122 963.00 4103.46 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
44. RPL36 ENSGALG00000000474 946.00 4031.02 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
45. RPS23 ENSGALG00000015617 935.00 3984.15 ribosomal protein S23
46. MT-ND1 MT-ND1 902.00 3843.53
47. RPL12 ENSGALG00000008806 882.00 3758.31 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
48. RPL14 ENSGALG00000043379 871.00 3711.44 ribosomal protein L14
49. RPS12 ENSGALG00000013990 860.00 3664.56 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
50. RPL38 ENSGALG00000001465 848.00 3613.43 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
51. RPS7 ENSGALG00000016392 834.00 3553.78 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
52. RPL8 ENSGALG00000016232 819.00 3489.86 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
53. NME2 ENSGALG00000002932 810.00 3451.51 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
54. RPL21 ENSGALG00000027035 803.00 3421.68 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
55. MT-ND4 MT-ND4 788.00 3357.76
56. CIRBP ENSGALG00000030918 785.00 3344.98 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
57. RPL26 RPL26 785.00 3344.98
58. RPS27A ENSGALG00000036790 775.00 3302.37 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
59. RPS16 ENSGALG00000026490 760.00 3238.45 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
60. RPS3A ENSGALG00000010077 758.00 3229.93 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
61. RPL7 ENSGALG00000035252 746.00 3178.80 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
62. ANP32B ENSGALG00000037483 732.00 3119.14 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
63. TCEB3 ENSGALG00000034625 719.00 3063.75 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
64. RPL37A ENSGALG00000011472 706.00 3008.35 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
65. RPS25 ENSGALG00000007699 694.00 2957.22 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
66. MDK ENSGALG00000008367 692.00 2948.70 midkine [Source:NCBI gene;Acc:423196]
67. MT-ND6 MT-ND6 686.00 2923.13
68. MT-CYB MT-CYB 655.00 2791.03
69. ENO1 ENSGALG00000002377 650.00 2769.73 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
70. RPL36AL ENSGALG00000004952 641.00 2731.38 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
71. RPL5 ENSGALG00000005922 610.00 2599.28 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
72. EIF5A2 ENSGALG00000009309 606.00 2582.24 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
73. ALDOC ENSGALG00000026077 604.00 2573.72 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
74. PRDX1 ENSGALG00000010243 597.00 2543.89 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
75. RPL10A ENSGALG00000002644 597.00 2543.89 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
76. RPS17 ENSGALG00000002157 594.00 2531.11 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
77. RPS13 ENSGALG00000006096 591.00 2518.32 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
78. HMGN2 HMGN2 590.00 2514.06
79. RPS6 ENSGALG00000015082 587.00 2501.28 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
80. RPL23 ENSGALG00000001634 585.00 2492.76 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
81. HBE 584.00 2488.49 hemoglobin subunit epsilon
82. RPS24 ENSGALG00000004871 580.00 2471.45 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
83. LDHB ENSGALG00000035836 571.00 2433.10 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
84. RPS3 ENSGALG00000017330 555.00 2364.92 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
85. UBB ENSGALG00000004509 549.00 2339.36 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
86. RPS20 ENSGALG00000014432 543.00 2313.79 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
87. ATP5G3 529.00 2254.13 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
88. PKM ENSGALG00000001992 521.00 2220.04 pyruvate kinase M1/2 [Source:NCBI gene;Acc:396456]
89. MT-CO1 MT-CO1 503.00 2143.34
90. EEF1D 488.00 2079.43 eukaryotic translation elongation factor 1 delta, transcript variant X13
91. TMSB4X ENSGALG00000026383 488.00 2079.43 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
92. ENSGALG00000028992 ENSGALG00000028992 462.00 1968.64
93. FTH FTH 453.00 1930.29
94. ENSGALG00000028649 ENSGALG00000028649 447.00 1904.72
95. HMGN5 ENSGALG00000007131 438.00 1866.37 high mobility group nucleosome binding domain 5, transcript variant X1
96. SLC25A6_1 ENSGALG00000016691 419.00 1785.41 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
97. MMP15 ENSGALG00000038758 416.00 1772.63 matrix metallopeptidase 15 [Source:HGNC Symbol;Acc:HGNC:7161]
98. STMN1 ENSGALG00000001475 409.00 1742.80 stathmin 1 [Source:NCBI gene;Acc:396057]
99. ENSGALG00000022570 ENSGALG00000022570 408.00 1738.54
100. RAN ENSGALG00000002569 407.00 1734.28 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA