Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_aorta, section s25.

Sample reads: 236,044. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 5832.00 24709.56
2. RPLP0 ENSGALG00000023294 3230.00 13685.16 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
3. gga-mir-3533 ENSGALG00000027736 2340.00 9914.33 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
4. GAPDH ENSGALG00000014442 2236.00 9473.69 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
5. gga-mir-3527 gga-mir-3527 2064.00 8744.95
6. RPS15 ENSGALG00000015195 2017.00 8545.81 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
7. RPS29 ENSGALG00000012229 2007.00 8503.44 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
8. RPS10 ENSGALG00000002813 1969.00 8342.44 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
9. MT-ATP6 MT-ATP6 1965.00 8325.50
10. EEF1A EEF1A 1943.00 8232.28
11. RPL35A ENSGALG00000007611, ENSGALG00000041230 1870.00 7922.99 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
12. RPL4 ENSGALG00000007711 1815.00 7689.96 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
13. HBZ ENSGALG00000023740 1775.00 7520.49 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
14. MT-ND5 MT-ND5 1755.00 7435.75
15. RPL15 ENSGALG00000011290 1630.00 6906.14 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
16. RPL13 ENSGALG00000006179 1619.00 6859.53 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
17. PPIA ENSGALG00000028600 1556.00 6592.61 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
18. RPSA 1548.00 6558.71 ribosomal protein SA
19. RPS2 ENSGALG00000005490 1544.00 6541.76 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
20. RPL23A ENSGALG00000003966 1516.00 6423.13 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
21. HBG1 HBG1 1503.00 6368.05
22. MT-ND1 MT-ND1 1495.00 6334.16
23. RPS4 RPS4 1373.00 5817.25
24. RPLP1 ENSGALG00000030878 1350.00 5719.81 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
25. RPS8 ENSGALG00000010124 1334.00 5652.02 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
26. RPL19 ENSGALG00000001658 1251.00 5300.35 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
27. RPL6 ENSGALG00000004818 1234.00 5228.33 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
28. RPS28 ENSGALG00000024398 1220.00 5169.01 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
29. RPS14 ENSGALG00000004588 1206.00 5109.69 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
30. RPL35 ENSGALG00000035677 1171.00 4961.40 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
31. MT-ND3 MT-ND3 1150.00 4872.43
32. RPS11 ENSGALG00000017299 1139.00 4825.82 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
33. RPL32 ENSGALG00000027142 1101.00 4664.82 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
34. RPS15A ENSGALG00000006771 1061.00 4495.34 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
35. RPL27A ENSGALG00000005948 1058.00 4482.63 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
36. MT-ND4 MT-ND4 1048.00 4440.26
37. RPL7A ENSGALG00000003197 1048.00 4440.26 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
38. RPL24 ENSGALG00000015339 1032.00 4372.47 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
39. RPS21 ENSGALG00000005338 1029.00 4359.76 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
40. GNB2L1 ENSGALG00000000122 1001.00 4241.13 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
41. RPL29 ENSGALG00000026978 998.00 4228.42 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
42. SNRPD1 ENSGALG00000041334 988.00 4186.05 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
43. RPL8 ENSGALG00000016232 969.00 4105.55 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
44. RPS23 ENSGALG00000015617 969.00 4105.55 ribosomal protein S23
45. RPL36 ENSGALG00000000474 968.00 4101.31 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
46. RPS12 ENSGALG00000013990 945.00 4003.86 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
47. HBE 908.00 3847.10 hemoglobin subunit epsilon
48. RPL12 ENSGALG00000008806 905.00 3834.39 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
49. RPL27 ENSGALG00000002837 903.00 3825.91 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
50. RPL18A 886.00 3753.89 ribosomal protein L18a
51. RPL26 RPL26 885.00 3749.65
52. RPL38 ENSGALG00000001465 873.00 3698.81 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
53. MT-CYB MT-CYB 869.00 3681.86
54. RPS16 ENSGALG00000026490 840.00 3558.99 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
55. RPS27A ENSGALG00000036790 840.00 3558.99 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
56. ENSGALG00000018384 ENSGALG00000018384 830.00 3516.62
57. RPL21 ENSGALG00000027035 818.00 3465.78 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
58. RPL37A ENSGALG00000011472 809.00 3427.65 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
59. CIRBP ENSGALG00000030918 807.00 3419.17 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
60. RPL36AL ENSGALG00000004952 806.00 3414.94 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
61. RPS7 ENSGALG00000016392 806.00 3414.94 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
62. RPL14 ENSGALG00000043379 791.00 3351.38 ribosomal protein L14
63. ANP32B ENSGALG00000037483 779.00 3300.54 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
64. MT-ND6 MT-ND6 761.00 3224.28
65. RPS3A ENSGALG00000010077 746.00 3160.72 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
66. NME2 ENSGALG00000002932 738.00 3126.83 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
67. RPL5 ENSGALG00000005922 688.00 2914.98 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
68. RPL7 ENSGALG00000035252 686.00 2906.51 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
69. RPS25 ENSGALG00000007699 685.00 2902.27 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
70. MT-CO1 MT-CO1 679.00 2876.85
71. HMGN2 HMGN2 622.00 2635.35
72. ENO1 ENSGALG00000002377 602.00 2550.61 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
73. RPL10A ENSGALG00000002644 602.00 2550.61 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
74. EIF5A2 ENSGALG00000009309 600.00 2542.14 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
75. LDHB ENSGALG00000035836 598.00 2533.66 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
76. TCEB3 ENSGALG00000034625 598.00 2533.66 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
77. MDK ENSGALG00000008367 592.00 2508.24 midkine [Source:NCBI gene;Acc:423196]
78. RPL23 ENSGALG00000001634 588.00 2491.29 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
79. PRDX1 ENSGALG00000010243 573.00 2427.74 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
80. RPS13 ENSGALG00000006096 572.00 2423.50 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
81. RPS24 ENSGALG00000004871 564.00 2389.61 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
82. UBB ENSGALG00000004509 563.00 2385.37 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
83. EEF1D 562.00 2381.13 eukaryotic translation elongation factor 1 delta, transcript variant X13
84. PKM ENSGALG00000001992 560.00 2372.66 pyruvate kinase M1/2 [Source:NCBI gene;Acc:396456]
85. RPS6 ENSGALG00000015082 559.00 2368.42 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
86. RPS17 ENSGALG00000002157 542.00 2296.40 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
87. STMN1 ENSGALG00000001475 534.00 2262.50 stathmin 1 [Source:NCBI gene;Acc:396057]
88. ENSGALG00000028992 ENSGALG00000028992 531.00 2249.79
89. ENSGALG00000028649 ENSGALG00000028649 521.00 2207.42
90. RPS3 ENSGALG00000017330 517.00 2190.47 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
91. TMSB4X ENSGALG00000026383 511.00 2165.05 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
92. RPS20 ENSGALG00000014432 494.00 2093.03 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
93. RPL37 ENSGALG00000014833 451.00 1910.84 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
94. ALDOC ENSGALG00000026077 446.00 1889.65 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
95. ATP5G3 439.00 1860.00 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
96. CRHOA CRHOA 433.00 1834.57
97. FTH FTH 429.00 1817.63
98. HMGN5 ENSGALG00000007131 403.00 1707.47 high mobility group nucleosome binding domain 5, transcript variant X1
99. CHCHD2 ENSGALG00000002495 397.00 1682.05 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:NCBI gene;Acc:417544]
100. ENSGALG00000022570 ENSGALG00000022570 390.00 1652.39
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA