Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_aorta, section s23.

Sample reads: 236,487. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 6210.00 26262.93
2. RPLP0 ENSGALG00000023294 2585.00 10932.31 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
3. gga-mir-3533 ENSGALG00000027736 2416.00 10217.59 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
4. EEF1A EEF1A 2304.00 9743.93
5. RPS10 ENSGALG00000002813 2283.00 9655.11 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
6. RPL35A ENSGALG00000007611, ENSGALG00000041230 2106.00 8906.56 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
7. GAPDH ENSGALG00000014442 2060.00 8712.02 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
8. gga-mir-3527 gga-mir-3527 1994.00 8432.89
9. RPL4 ENSGALG00000007711 1907.00 8064.96 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
10. RPS29 ENSGALG00000012229 1881.00 7955.00 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
11. RPS15 ENSGALG00000015195 1825.00 7718.17 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
12. MT-ATP6 MT-ATP6 1812.00 7663.19
13. HBZ ENSGALG00000023740 1760.00 7443.28 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
14. RPS8 ENSGALG00000010124 1580.00 6682.03 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
15. HBG1 HBG1 1536.00 6495.95
16. RPL13 ENSGALG00000006179 1504.00 6360.62 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
17. PPIA ENSGALG00000028600 1484.00 6276.04 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
18. RPS2 ENSGALG00000005490 1422.00 6013.83 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
19. MT-ND5 MT-ND5 1414.00 5980.00
20. RPLP1 ENSGALG00000030878 1405.00 5941.93 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
21. RPSA 1402.00 5929.25 ribosomal protein SA
22. RPL15 ENSGALG00000011290 1370.00 5793.91 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
23. RPL23A ENSGALG00000003966 1330.00 5624.75 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
24. MT-ND1 MT-ND1 1316.00 5565.54
25. RPS28 ENSGALG00000024398 1307.00 5527.48 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
26. RPL19 ENSGALG00000001658 1281.00 5417.52 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
27. RPS14 ENSGALG00000004588 1234.00 5218.75 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
28. RPL6 ENSGALG00000004818 1217.00 5146.86 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
29. RPS4 RPS4 1166.00 4931.17
30. RPL7A ENSGALG00000003197 1119.00 4732.40 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
31. RPL29 ENSGALG00000026978 1113.00 4707.03 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
32. HBE 1105.00 4673.19 hemoglobin subunit epsilon
33. RPL32 ENSGALG00000027142 1093.00 4622.44 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
34. MT-ND4 MT-ND4 1079.00 4563.24
35. SNRPD1 ENSGALG00000041334 1045.00 4419.45 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
36. MT-ND3 MT-ND3 1037.00 4385.61
37. RPL18A 1032.00 4364.47 ribosomal protein L18a
38. RPL24 ENSGALG00000015339 1025.00 4334.86 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
39. RPS21 ENSGALG00000005338 1022.00 4322.18 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
40. ENSGALG00000018384 ENSGALG00000018384 1020.00 4313.72
41. RPS15A ENSGALG00000006771 1007.00 4258.74 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
42. RPL38 ENSGALG00000001465 1004.00 4246.05 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
43. RPL27 ENSGALG00000002837 988.00 4178.38 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
44. RPL27A ENSGALG00000005948 987.00 4174.16 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
45. RPS11 ENSGALG00000017299 981.00 4148.78 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
46. GNB2L1 ENSGALG00000000122 975.00 4123.41 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
47. RPL35 ENSGALG00000035677 964.00 4076.89 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
48. RPL12 ENSGALG00000008806 958.00 4051.51 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
49. RPL36 ENSGALG00000000474 941.00 3979.62 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
50. RPS16 ENSGALG00000026490 931.00 3937.32 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
51. RPL26 RPL26 923.00 3903.49
52. RPL8 ENSGALG00000016232 882.00 3730.10 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
53. RPS12 ENSGALG00000013990 878.00 3713.18 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
54. MT-CYB MT-CYB 872.00 3687.81
55. NME2 ENSGALG00000002932 834.00 3527.10 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
56. RPL14 ENSGALG00000043379 834.00 3527.10 ribosomal protein L14
57. RPS3A ENSGALG00000010077 822.00 3476.35 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
58. RPS7 ENSGALG00000016392 820.00 3467.89 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
59. RPL21 ENSGALG00000027035 794.00 3357.93 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
60. RPS23 ENSGALG00000015617 773.00 3269.12 ribosomal protein S23
61. RPL36AL ENSGALG00000004952 758.00 3205.68 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
62. RPL7 ENSGALG00000035252 755.00 3193.00 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
63. RPS27A ENSGALG00000036790 755.00 3193.00 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
64. CIRBP ENSGALG00000030918 753.00 3184.54 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
65. RPL37A ENSGALG00000011472 744.00 3146.48 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
66. RPL5 ENSGALG00000005922 726.00 3070.35 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
67. ANP32B ENSGALG00000037483 714.00 3019.60 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
68. MT-ND6 MT-ND6 685.00 2896.96
69. TCEB3 ENSGALG00000034625 679.00 2871.58 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
70. ENO1 ENSGALG00000002377 667.00 2820.83 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
71. PRDX1 ENSGALG00000010243 664.00 2808.15 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
72. MDK ENSGALG00000008367 659.00 2787.00 midkine [Source:NCBI gene;Acc:423196]
73. RPL10A ENSGALG00000002644 646.00 2732.02 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
74. HMGN2 HMGN2 638.00 2698.19
75. RPS6 ENSGALG00000015082 634.00 2681.27 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
76. LDHB ENSGALG00000035836 631.00 2668.58 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
77. UBB ENSGALG00000004509 628.00 2655.90 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
78. RPS13 ENSGALG00000006096 626.00 2647.44 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
79. RPS25 ENSGALG00000007699 623.00 2634.75 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
80. RPS17 ENSGALG00000002157 593.00 2507.88 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
81. ENSGALG00000028992 ENSGALG00000028992 579.00 2448.67
82. RPS3 ENSGALG00000017330 561.00 2372.54 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
83. MT-CO1 MT-CO1 559.00 2364.09
84. RPS24 ENSGALG00000004871 558.00 2359.86 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
85. RPL23 ENSGALG00000001634 556.00 2351.40 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
86. ENSGALG00000028649 ENSGALG00000028649 553.00 2338.71
87. EEF1D 550.00 2326.02 eukaryotic translation elongation factor 1 delta, transcript variant X13
88. EIF5A2 ENSGALG00000009309 543.00 2296.42 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
89. FTH FTH 541.00 2287.96
90. STMN1 ENSGALG00000001475 537.00 2271.05 stathmin 1 [Source:NCBI gene;Acc:396057]
91. RPS20 ENSGALG00000014432 520.00 2199.15 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
92. ATP5G3 502.00 2123.03 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
93. PKM ENSGALG00000001992 484.00 2046.90 pyruvate kinase M1/2 [Source:NCBI gene;Acc:396456]
94. HMGN5 ENSGALG00000007131 473.00 2000.38 high mobility group nucleosome binding domain 5, transcript variant X1
95. CHCHD2 ENSGALG00000002495 437.00 1848.13 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:NCBI gene;Acc:417544]
96. ALDOC ENSGALG00000026077 429.00 1814.30 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
97. SLC25A6_1 ENSGALG00000016691 418.00 1767.78 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
98. RPL31 ENSGALG00000016775 417.00 1763.55 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
99. RPL37 ENSGALG00000014833 417.00 1763.55 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
100. DYL1 ENSGALG00000007153 394.00 1666.28 dynein light chain 1 cytoplasmic [Source:NCBI gene;Acc:427708]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA