Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_aorta, section s22.

Sample reads: 235,736. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 5332.00 22622.36
2. RPLP0 ENSGALG00000023294 3249.00 13784.71 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
3. gga-mir-3533 ENSGALG00000027736 2607.00 11060.86 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
4. EEF1A EEF1A 2545.00 10797.81
5. RPL35A ENSGALG00000007611, ENSGALG00000041230 2434.00 10326.86 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
6. RPS10 ENSGALG00000002813 2255.00 9567.41 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
7. RPS15 ENSGALG00000015195 2178.00 9240.72 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
8. gga-mir-3527 gga-mir-3527 2077.00 8812.20
9. GAPDH ENSGALG00000014442 2069.00 8778.26 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
10. RPS29 ENSGALG00000012229 2033.00 8625.52 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
11. RPL4 ENSGALG00000007711 2019.00 8566.12 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
12. RPL13 ENSGALG00000006179 1764.00 7484.22 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
13. RPS2 ENSGALG00000005490 1706.00 7238.14 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
14. MT-ATP6 MT-ATP6 1687.00 7157.52
15. HBZ ENSGALG00000023740 1549.00 6572.02 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
16. RPL23A ENSGALG00000003966 1474.00 6253.82 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
17. RPS4 RPS4 1471.00 6241.09
18. RPSA 1442.00 6118.05 ribosomal protein SA
19. RPL15 ENSGALG00000011290 1377.00 5842.27 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
20. HBG1 HBG1 1364.00 5787.12
21. RPS8 ENSGALG00000010124 1361.00 5774.39 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
22. PPIA ENSGALG00000028600 1360.00 5770.14 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
23. RPLP1 ENSGALG00000030878 1319.00 5596.19 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
24. MT-ND1 MT-ND1 1309.00 5553.76
25. RPL19 ENSGALG00000001658 1289.00 5468.91 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
26. MT-ND5 MT-ND5 1235.00 5239.80
27. RPS28 ENSGALG00000024398 1228.00 5210.10 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
28. RPL35 ENSGALG00000035677 1207.00 5121.00 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
29. RPS14 ENSGALG00000004588 1157.00 4908.87 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
30. MT-ND3 MT-ND3 1145.00 4857.95
31. RPL6 ENSGALG00000004818 1121.00 4756.13 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
32. RPL27A ENSGALG00000005948 1084.00 4599.14 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
33. HBE 1056.00 4480.35 hemoglobin subunit epsilon
34. RPL24 ENSGALG00000015339 1052.00 4463.38 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
35. RPL7A ENSGALG00000003197 1040.00 4412.46 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
36. RPS21 ENSGALG00000005338 1020.00 4327.61 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
37. MT-ND4 MT-ND4 1016.00 4310.64
38. RPL12 ENSGALG00000008806 1008.00 4276.70 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
39. RPL29 ENSGALG00000026978 1005.00 4263.97 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
40. RPL36 ENSGALG00000000474 996.00 4225.78 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
41. RPS15A ENSGALG00000006771 996.00 4225.78 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
42. RPL32 ENSGALG00000027142 985.00 4179.11 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
43. RPL27 ENSGALG00000002837 982.00 4166.38 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
44. SNRPD1 ENSGALG00000041334 957.00 4060.31 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
45. GNB2L1 ENSGALG00000000122 945.00 4009.40 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
46. RPL18A 945.00 4009.40 ribosomal protein L18a
47. ANP32B ENSGALG00000037483 919.00 3899.09 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
48. RPL38 ENSGALG00000001465 913.00 3873.63 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
49. RPS12 ENSGALG00000013990 857.00 3636.04 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
50. RPL7 ENSGALG00000035252 841.00 3568.16 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
51. RPS11 ENSGALG00000017299 833.00 3534.21 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
52. RPS23 ENSGALG00000015617 817.00 3466.33 ribosomal protein S23
53. RPL8 ENSGALG00000016232 812.00 3445.12 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
54. RPS27A ENSGALG00000036790 811.00 3440.87 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
55. RPL26 RPL26 784.00 3326.32
56. RPS7 ENSGALG00000016392 783.00 3322.08 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
57. RPS16 ENSGALG00000026490 770.00 3266.92 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
58. NME2 ENSGALG00000002932 761.00 3228.74 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
59. MT-CYB MT-CYB 745.00 3160.85
60. CIRBP ENSGALG00000030918 738.00 3131.15 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
61. ENO1 ENSGALG00000002377 721.00 3059.03 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
62. RPS3A ENSGALG00000010077 710.00 3012.35 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
63. RPL14 ENSGALG00000043379 708.00 3003.87 ribosomal protein L14
64. RPL36AL ENSGALG00000004952 699.00 2965.68 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
65. TCEB3 ENSGALG00000034625 699.00 2965.68 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
66. RPL5 ENSGALG00000005922 691.00 2931.74 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
67. RPL21 ENSGALG00000027035 687.00 2914.77 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
68. RPS13 ENSGALG00000006096 666.00 2825.67 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
69. RPS25 ENSGALG00000007699 654.00 2774.76 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
70. RPL37A ENSGALG00000011472 651.00 2762.03 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
71. LDHB ENSGALG00000035836 634.00 2689.91 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
72. ALDOC ENSGALG00000026077 627.00 2660.21 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
73. TMSB4X ENSGALG00000026383 614.00 2605.05 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
74. EIF5A2 ENSGALG00000009309 608.00 2579.59 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
75. PRDX1 ENSGALG00000010243 586.00 2486.25 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
76. HMGN2 HMGN2 573.00 2431.10
77. RPS24 ENSGALG00000004871 573.00 2431.10 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
78. UBB ENSGALG00000004509 567.00 2405.64 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
79. MT-ND6 MT-ND6 565.00 2397.16
80. MT-CO1 MT-CO1 558.00 2367.46
81. RPL10A ENSGALG00000002644 555.00 2354.73 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
82. RPS3 ENSGALG00000017330 549.00 2329.27 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
83. RPL23 ENSGALG00000001634 543.00 2303.82 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
84. RPS17 ENSGALG00000002157 537.00 2278.36 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
85. PKM ENSGALG00000001992 534.00 2265.63 pyruvate kinase M1/2 [Source:NCBI gene;Acc:396456]
86. MDK ENSGALG00000008367 530.00 2248.66 midkine [Source:NCBI gene;Acc:423196]
87. RPS20 ENSGALG00000014432 520.00 2206.23 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
88. STMN1 ENSGALG00000001475 509.00 2159.56 stathmin 1 [Source:NCBI gene;Acc:396057]
89. FTH FTH 506.00 2146.83
90. EEF1D 494.00 2095.92 eukaryotic translation elongation factor 1 delta, transcript variant X13
91. ATP5G3 491.00 2083.19 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
92. RPS6 ENSGALG00000015082 482.00 2045.01 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
93. ENSGALG00000028649 ENSGALG00000028649 479.00 2032.28
94. ENSGALG00000028992 ENSGALG00000028992 464.00 1968.64
95. RAN ENSGALG00000002569 459.00 1947.42 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
96. HMGN5 ENSGALG00000007131 452.00 1917.72 high mobility group nucleosome binding domain 5, transcript variant X1
97. CRHOA CRHOA 447.00 1896.51
98. ENSGALG00000022570 ENSGALG00000022570 433.00 1837.11
99. RPL37 ENSGALG00000014833 405.00 1718.32 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
100. RPL31 ENSGALG00000016775 385.00 1633.46 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA